Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  456 bits (1173), Expect = e-132
 Identities = 263/557 (47%), Positives = 357/557 (64%), Gaps = 19/557 (3%)

Query: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
           FA LG+ + +L A++ +GYE+PSPIQ++ IP +L G D++G AQTG+GKTAAF+LP+L  
Sbjct: 8   FAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILSK 67

Query: 68  LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127
           +DP  K  Q L+LAPTRELA+QVA A   +SK M G+ VVA+YGG     QL+A+RQG Q
Sbjct: 68  IDPARKEVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAIRQGAQ 127

Query: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187
           ++V TPGRL+DHL R +  LS +  LVLDEADEML++GF++D+E I   +PE  QT LFS
Sbjct: 128 VIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQTVLFS 187

Query: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247
           AT+P +IR I  + ++EPQ ++I +   T   I Q++  V   +K +A++R LE EDFDA
Sbjct: 188 ATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEVEDFDA 247

Query: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307
            I FVRTK ATL++A ALE  GY +AALNGD+ Q  RE+ +E LKDGRLDI++ATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307

Query: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367
           GLDV RI+ V N D+P D ESYVHRIGRTGRAGR GRALL V  RERR+L+ IER     
Sbjct: 308 GLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIERVTNQK 367

Query: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427
           + E  LPNA+ +   R++K    +   +  ++   +  LL K+             LAAA
Sbjct: 368 VAEARLPNAQQVLDARIKKLTNSLAPLVADAEA-THGELLDKL---VADIGCSPRALAAA 423

Query: 428 LLKMAQGERTLI---VPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDR---PRRERR 481
           LL+ A   + L    V  + P+ P    R+R +R   DR +R   GDRE R   P  E R
Sbjct: 424 LLRKATNGQALTLAEVEREQPLVPTSSPRERTERS--DRPERS--GDRERRAPVPLAEGR 479

Query: 482 DVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEV 541
                   R  +G  DG+  R+++GAI NEG ++   IG I++  S S +ELP+     +
Sbjct: 480 -----ARCRTPLGARDGIAARNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERL 534

Query: 542 LQHFTRTRILNKPMNMQ 558
           L     TR+  K + ++
Sbjct: 535 LGKLKDTRVGGKQLKLR 551