Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 663 a.a., DEAD/DEAH box family ATP-dependent RNA helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  500 bits (1288), Expect = e-146
 Identities = 289/639 (45%), Positives = 391/639 (61%), Gaps = 35/639 (5%)

Query: 1   MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60
           M +    F+DL L + IL AL ++G+  P+PIQA  IP LL GRD LG AQTG+GKTAAF
Sbjct: 21  MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLEGRDALGKAQTGTGKTAAF 80

Query: 61  SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120
           SLPLL  L+     PQ +V+APTRELA+QVA  + +  ++++G+ V+ +YGG     Q+R
Sbjct: 81  SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR 140

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180
           AL+ G  IVVGTPGR+ D + R  L L +    +LDEADEML+MGF++DV  IM Q PE 
Sbjct: 141 ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES 200

Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
            Q  LFSATMP  ++ I  RF++ P+ V +  S  T   + Q YW V G+ K+EA+ R L
Sbjct: 201 AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL 260

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300
           E E+ DA+I+FVRT+  T  +A+ L   G+ +AAL+GD+ Q+LRE+T++ +K G +DIL+
Sbjct: 261 ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV 320

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDV ARGLDV RI+ V NYDIP D ESY+HRIGRTGRAGR G+A+L V   + R+LR I
Sbjct: 321 ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI 380

Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420
           ER  + ++ E++LP+ + + + RL K   ++    E S L+++  L+ K+Q +    E+D
Sbjct: 381 ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASL---EID 437

Query: 421 LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480
             TLAA LLK  QG+R L      PM    E  +R+    R+R D     DR D  R  R
Sbjct: 438 ATTLAAILLKRQQGKRPLFYVGADPM---IEAMEREKSRRRERRD-----DRRDGDRPAR 489

Query: 481 RDVG-------DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 533
           R+ G       D   Y+++VGRD GV+V+ IVGA+ANE  ++   IG IKL   H+ ++L
Sbjct: 490 REFGGRDQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQL 549

Query: 534 PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGER 593
           PK M  +V     + RI  K +   ++ D       E RGG R  GG RREGGR   G R
Sbjct: 550 PKAMSNDVSSKLRKLRIRQKEVG-AVVCDFDDFR--ESRGGARREGGPRREGGRRPEGNR 606

Query: 594 -------REGGRGDGRRFSGERREGRAPRRDDSTGRRRF 625
                  REGGR  GR   GE R  R        G RRF
Sbjct: 607 EGGFRGGREGGREGGRGRGGEGRPFR-------EGERRF 638