Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  302 bits (774), Expect = 2e-86
 Identities = 198/502 (39%), Positives = 275/502 (54%), Gaps = 47/502 (9%)

Query: 6   TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLL 65
           T FADLGL   +L A+ D GY  P+PIQ   IP  L  RD+LG+AQTG+GKTA+F LP+L
Sbjct: 2   TNFADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPML 61

Query: 66  QNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL 122
             L+      + P+ L+L PTRELA QVAE    + K+ + +N+  L GG  +D Q R L
Sbjct: 62  TLLEKGRARARMPRTLILEPTRELAAQVAENFDKYGKNHK-LNIALLIGGVSFDEQDRKL 120

Query: 123 RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182
            +G  +++ TPGRLLDH +RG L ++ +  LV+DEAD ML MGFI D+E I   IP   Q
Sbjct: 121 ERGADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQ 180

Query: 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFL- 240
           T  FSATMP  I+++  RF++ P+ + +    +T   ++Q +    G   +  A++R L 
Sbjct: 181 TLFFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELI 240

Query: 241 -EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL 299
              ED   AIIF   K    E+  +L+R+G++  AL+GDM+Q  R   L   KDG + +L
Sbjct: 241 RSQEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLL 300

Query: 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359
           +A+DVAARGLD+  +S V N+D+P+ +E YVHRIGRTGRAGR+G A   V  RE +    
Sbjct: 301 VASDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDA 360

Query: 360 IERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSD----------LDQYRALLSK 409
           IE   KL   +VE  N +L          +++ + +ES D           D+ R    K
Sbjct: 361 IE---KLIGQKVEWFNGDL----------SELPEPMESHDSRRDRGSDGRKDRKRERPGK 407

Query: 410 IQP-----TAEGEEL-DLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDR 463
           +       TA G    +LET+          ER   V  +     K     R DR  R +
Sbjct: 408 VHADRKPVTASGNNTEELETVP---------ERVDAVKIERNADSKDRHNGRSDRPGRAQ 458

Query: 464 NDRGPRGDREDRPRRERRDVGD 485
           N      D  DR +R RRD  D
Sbjct: 459 N--AANDDNRDRRQRNRRDHDD 478