Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  483 bits (1242), Expect = e-140
 Identities = 264/570 (46%), Positives = 366/570 (64%), Gaps = 27/570 (4%)

Query: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
           TFADL +   +L A+ D+GYE P+ IQA  IP L+ G DV+G+AQTG+GKTAAF++P+L 
Sbjct: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73

Query: 67  NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126
            +D   K PQ LVL PTRELA+QVAEA   +  ++  +NV+ +YGG  Y VQL  LR+G 
Sbjct: 74  KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133

Query: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186
           Q+VVGTPGR++DHL+R TLDLS++  LVLDEADEML MGF +DVE I+++ PE  Q ALF
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193

Query: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 246
           SATMP AIR+++ +++ +P EV  ++      +ISQSY  V   RK +AL R LE E F+
Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV--ARKMDALTRVLEVEPFE 251

Query: 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306
           A I+FVRTK AT E+AE L   G+++AA++GD+ QA RE+T+  L+DG +DIL+ATDVAA
Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311

Query: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366
           RGLDVERIS V+NYDIP D+ESYVHRIGRTGRAGR+G AL+FV  RE  LL+ IE+  + 
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371

Query: 367 TIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAA 426
           T+ E +LP  E +  +R+ KFA  +   L    ++ +R L+ + +      ++ +  +AA
Sbjct: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYE---REHDVPMADIAA 428

Query: 427 ALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDM 486
           AL    +G    ++ PD P+                R +R  R DR  RP+R      D+
Sbjct: 429 ALAVQCRGGEAFLMAPDPPL---------------SRRNRDQRRDRPQRPKRR----PDL 469

Query: 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFT 546
             YR+ VG+   +    IVGAIANEG +     G I++    S +ELP  +P   L+   
Sbjct: 470 TTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLA 529

Query: 547 RTRILNKPMNMQLLGDAQPHTGGERRGGGR 576
           +TRI    ++++     +P     R  GG+
Sbjct: 530 QTRISGVLIDLR---PYRPPDAARRHNGGK 556