Pairwise Alignments

Query, 455 a.a., Periplasmic pH-dependent serine endoprotease DegQ from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 450 a.a., protease Do (RefSeq) from Shewanella loihica PV-4

 Score =  477 bits (1227), Expect = e-139
 Identities = 253/458 (55%), Positives = 333/458 (72%), Gaps = 11/458 (2%)

Query: 1   MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAPMLEKVLPAVVSVRVEG 60
           MK +  LLSA  L   L +  +    A+IP  V  QA LPSLAPMLEK  PAVV+V V G
Sbjct: 1   MKTKLSLLSAALLGASLMVMPAVSQ-AAIPLAVEGQA-LPSLAPMLEKTTPAVVAVAVSG 58

Query: 61  TASQGQKIPEEFKKFFGDDLPDQPAQ--PFEGLGSGVIINASKGYVLTNNHVINQAQKIS 118
           T    Q++P+ F+ FFG + P +  Q  PF+GLGSGVII+A KGY++TNNHVI  A +I 
Sbjct: 59  THVSKQRLPDAFRYFFGPNAPREQVQERPFKGLGSGVIIDAKKGYIVTNNHVIEGADEIL 118

Query: 119 IQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLG 178
           I L+DGRE +AKLIG+D +SD+ALLQI+    L  +  ADSD+L+VGDFAVA+GNPFGLG
Sbjct: 119 IGLHDGREIEAKLIGTDAESDVALLQIE-AKNLVALKRADSDELKVGDFAVAIGNPFGLG 177

Query: 179 QTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGG 238
           QT TSGIVSA+GRSGL +E LENFIQTDA+IN GNSGGAL+NLNGELIGINTAI+APGGG
Sbjct: 178 QTVTSGIVSAMGRSGLGIEMLENFIQTDAAINSGNSGGALVNLNGELIGINTAIVAPGGG 237

Query: 239 SVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVL 298
           +VGIGFAIP+NM   L  QLI+ GE++RG+LG+ G ++ +++A+ F LD Q G FV+EV+
Sbjct: 238 NVGIGFAIPANMVNNLVDQLIEHGEVRRGVLGVSGRDLDSELAQGFGLDSQHGGFVNEVM 297

Query: 299 PGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL 358
           P S + KAG+KAGDII S+N KP+ SF ELR++I T   G KVKLGL+R+G    V   L
Sbjct: 298 PDSAADKAGIKAGDIIVSVNDKPIKSFQELRAKIGTMGAGAKVKLGLIRDGDEKTVTAVL 357

Query: 359 -DTSTSSSASAEMITPALEGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGV 417
            + S  +  +A  + P L GATL + +     KG++I E+ +GSPAA +GL K D+I+GV
Sbjct: 358 GEASQQTETAAGAVHPMLAGATLENNK-----KGVEITEIAQGSPAAASGLLKGDIIVGV 412

Query: 418 NRDRVNSIAEMRKVLAAKPAIIALQIVRGNESIYLLMR 455
           NR R+  + E++  L  +   +AL+++RG+ S+YL++R
Sbjct: 413 NRTRIEDLKELKAELKEQHGAVALKLLRGDNSLYLVLR 450