Pairwise Alignments

Query, 425 a.a., hypothetical protein from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 317 a.a., branched-chain amino acid ABC transporter, permease protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  219 bits (557), Expect = 1e-61
 Identities = 129/332 (38%), Positives = 183/332 (55%), Gaps = 25/332 (7%)

Query: 87  VKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFY 146
           + +K     L VL    P  +     D+     +Y +L L LN+++G +GL  +G+  FY
Sbjct: 2   ISRKASYAGLAVLIAVLPLFLDPYWTDVCVSIGLYAVLALSLNLILGQAGLFHMGHAAFY 61

Query: 147 AIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVR 206
           A+GAYT A+LN  Y +     +P+AGL+AA    ++  P++ LRGDYL IVT+G  EIVR
Sbjct: 62  AVGAYTAAILNTVYHVPVLWTMPVAGLLAALFALVVARPIIHLRGDYLLIVTIGIVEIVR 121

Query: 207 ILLLNNT-EITGGPNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLY 265
           I L+NN   ITGG NGI  I +P  FG + S+                       + F Y
Sbjct: 122 IALINNVFGITGGANGIFGISRPMLFGYKISKP----------------------IQFYY 159

Query: 266 LVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGF 325
           L+    V +S+ +  RL     GRA   ++ED++A    G+     KL AF + A +AG 
Sbjct: 160 LI-WTWVAISILLFRRLECSRFGRALNYIKEDDVAAEGSGVDTAYYKLAAFVLGALWAGM 218

Query: 326 AGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEY 385
            GT +AA+   +SPESF+F ES  + AIV+LGG GS   V+L A LL+   EL RDF   
Sbjct: 219 TGTFYAAKMTIISPESFSFWESVVLFAIVILGG-GSNRGVLLGAFLLIGLPELFRDFASA 277

Query: 386 SMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417
            ML+ G  MV+MMI+RPQG+LP    + ++ N
Sbjct: 278 RMLIFGLAMVVMMIFRPQGMLPPLPRKYRIDN 309