Pairwise Alignments

Query, 374 a.a., Lipopolysaccharide core biosynthesis protein RfaG from Escherichia coli HS(pFamp)R (ATCC 700891)

Subject, 374 a.a., glycosyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 43/370 (11%)

Query: 1   MIVAFCLYKYFPFGGLQRDFMRIAQTVTARGHHVRVYTQSWEGECPDV-----FELIKVP 55
           M + +C+      GG++R     A  + A G+ V + T    G  P        E + + 
Sbjct: 1   MRIVYCISGTCNSGGMERVLSNKANYLAAHGYEVTIVTTDQRGRRPFFALDGRIECVDLD 60

Query: 56  VKSHTNHGRN-----AEYFTWVQKHLREHPVDKVVGFNKMPGLDVYYAADVCYAEKVAQE 110
           V   TN+G++       Y     KH R   + KV+   K       +  DV +   +   
Sbjct: 61  VNYETNNGKSFFNKLVHYPFKQLKHKRR--LTKVLNLIKPDITVSMFCNDVAFLPSIQDG 118

Query: 111 KGFFYRLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAERFHILPPGIY 170
                 +     H++ F+R  +++     L  L DK     ++      ++F +L    +
Sbjct: 119 SKKVLEV-----HFSRFKRLQYDR---KGLWRLADKWRNRNEQRQVACFDKFVVLT---H 167

Query: 171 PDRKYSQQPANSREIFRKKNGITE-----QQYLLLQVGSDFTRKGVDRSIEALASLPDSL 225
            D+ Y +  AN   I   +    +     +   ++ VG    +KG D  + A   + DS+
Sbjct: 168 EDKDYWEGHANIEVIPNAQTFACDVPAALESKTVVAVGRYTYQKGFDMLLRAWRRVCDSI 227

Query: 226 RHNTLLYVVGQDKPRKFEALAEK---RGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEA 282
             +  L++VG+ + +  E+L ++     +   V      +D+  +   A +L+  +  E 
Sbjct: 228 -DDWQLHIVGEGEMK--ESLQQQILDLSLEDRVELCPATSDIQSVYREASVLVLSSRYEG 284

Query: 283 AGIVLLEAITAGLPVLT---------TAVCGYAPYIVEANCGEAIAEPFRQETLNEILRK 333
            G+VLLEA TAG+P ++             G   Y+V AN   A+AE       +E LRK
Sbjct: 285 FGMVLLEAQTAGVPTVSFDCKCGPSDIVADGVTGYLVPANDIPALAEKLLVLMRDETLRK 344

Query: 334 ALTQSSLRQA 343
            + +++   A
Sbjct: 345 QMGRNAFADA 354