Pairwise Alignments

Query, 319 a.a., L,D-transpeptidase LdtC from Escherichia coli ECRC99

Subject, 304 a.a., ErfK/YbiS/YcfS/YnhG family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  300 bits (767), Expect = 4e-86
 Identities = 156/292 (53%), Positives = 200/292 (68%), Gaps = 6/292 (2%)

Query: 22  ALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVP 81
           +L A A  +PLP + SRLVGEN ++ V     +LE IA K+ +G   LL+ANPGVDP++P
Sbjct: 17  SLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLGLSNLLEANPGVDPFLP 76

Query: 82  RAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTM 141
             GS L IP Q +LP+APREGIVIN+AE+RLYYYP GKN+V V PIGIGQ+G DT     
Sbjct: 77  TPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDT-PENW 135

Query: 142 VTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHG 201
           VT+V  KRANPTWTPT  IR  Y A+G  LPAV PAGPDNPMG +A+ +   G +Y +HG
Sbjct: 136 VTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYI---GNLYAIHG 192

Query: 202 TNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQP 261
           TNA FGIG+RVS GC+RLR DDI+ LF  V  GT+V  +N PIK + EP+G R + VHQP
Sbjct: 193 TNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEEPDGKRYLAVHQP 252

Query: 262 LSEKIDDDPQLLPI--TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRR 311
           LS  I +     P+  TL   +  F   A TD+ V++ ++D R+G+P  + +
Sbjct: 253 LSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTGVPTIINQ 304