Pairwise Alignments

Query, 586 a.a., 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO from Escherichia coli ECRC99

Subject, 727 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  551 bits (1419), Expect = e-161
 Identities = 281/578 (48%), Positives = 376/578 (65%), Gaps = 5/578 (0%)

Query: 4   TFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGKGA 63
           TFI GKD  LE +IA    KL++LG +IE +SW N VPNVWS+HIRD    +CFTNGKGA
Sbjct: 150 TFIVGKDLPLEQTIANMTAKLAELGMKIEISSWRNLVPNVWSLHIRDAASPMCFTNGKGA 209

Query: 64  TKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGLLD 123
           TK++AL SALGE+ ERLS N+F+ D + GE IAN  FVHYPNEKWFPL E+D +P GLLD
Sbjct: 210 TKESALCSALGEFIERLSCNFFYNDQYFGEEIANAEFVHYPNEKWFPLEEDDSLPAGLLD 269

Query: 124 ERLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSNGM 183
           E     YD + EL GS L+D  SGN +RGIC +P+ R SD +TVY P N+I NL++SNGM
Sbjct: 270 EYCLDIYDNDGELCGSHLVDTNSGNYERGICAIPYIRHSDGETVYFPSNLIENLFLSNGM 329

Query: 184 SAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEGFP 243
           SAGN   EA+VQ LSE+FER VK +II E I+LP++P DVLA+YP++V  I+ LEA+GFP
Sbjct: 330 SAGNNLAEAKVQCLSEIFERAVKRQIIEEEIALPDVPKDVLAKYPSIVAGIDALEAQGFP 389

Query: 244 IFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVF 303
           +   D SLGGQ+PV+CV L NP  G  FASFGAHP   VALER++TELLQGR  + L+  
Sbjct: 390 VVVKDASLGGQFPVMCVTLMNPRTGGVFASFGAHPSLEVALERSLTELLQGRSFEGLNDV 449

Query: 304 TPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLMAIF 363
             PTF+   V E  N   HFIDS+G+ISW  F    DY FV+W+FSGT EEE   L  I 
Sbjct: 450 QKPTFNSMAVQEPENFVEHFIDSTGVISWRFFSAKHDYEFVEWDFSGTNEEESTALFGIL 509

Query: 364 NKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGSEWE 423
                E YIA++  LG  ACRI+VPG S++YP  DL   N +     RE IL+L      
Sbjct: 510 EDLGLEAYIAEFTALG-SACRILVPGYSEVYPVTDLIWDNTNKALDFREDILNL--HRLS 566

Query: 424 KEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLEQALV 483
            ++  +L+E+L+E   D++T +  L+G+    +  W  L I ELK +  LA G+LE A  
Sbjct: 567 DDELADLVERLEESELDNYTDIITLIGIEFDENTVWGQLTILELKLLCYLALGELEAAQE 626

Query: 484 WTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAA 543
            TE  +++N +  + +R  +Y+ +  +L ++ +++     Y +   RM+G + ++A   +
Sbjct: 627 LTETFLQYNDN--TVKRGLFYQAMSAVLEISLDDELALEDYRHNLTRMFGEETMDAVIGS 684

Query: 544 MSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAKA 581
           + G   FYGL P    L     HQ L+++Y+KL  A+A
Sbjct: 685 VEGSVRFYGLTPTSMKLEGLDRHQRLIESYKKLHAARA 722