Pairwise Alignments

Query, 586 a.a., 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO from Escherichia coli ECRC99

Subject, 728 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  535 bits (1377), Expect = e-156
 Identities = 269/579 (46%), Positives = 376/579 (64%), Gaps = 4/579 (0%)

Query: 2   TQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVWSVHIRDKECALCFTNGK 61
           + T+I GKD  LE +IA   + L+ LG +IE +SW N VPNVWS+HIRD    +CFTNGK
Sbjct: 148 SSTYILGKDLPLEQTIANMTEILAGLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGK 207

Query: 62  GATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTENDDVPEGL 121
           GA+K++AL SALGE+ ERL+ N+F+ D + G  IAN  FVHYPNEKWF LT++D +PEG+
Sbjct: 208 GASKESALCSALGEFIERLNCNFFYNDQFFGLDIANSEFVHYPNEKWFALTDDDSLPEGM 267

Query: 122 LDERLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTRQSDNQTVYIPMNIIGNLYVSN 181
           LD+     Y+P+ EL GS LID  SGN +RGIC +P+ R+SD +TVY P N+I NL++SN
Sbjct: 268 LDDYSLEIYNPDGELCGSHLIDTNSGNIERGICTIPYKRRSDGETVYFPSNLIENLFLSN 327

Query: 182 GMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPEIPADVLARYPAVVEAIETLEAEG 241
           GMSAGN   EA VQ LSE+FER VK +II + I LP++P  VL +YP+++  I+ LE +G
Sbjct: 328 GMSAGNNLQEAEVQCLSEIFERAVKRQIIEQEIVLPDVPMAVLEKYPSILAGIKGLEEQG 387

Query: 242 FPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLD 301
           FP+   D SLGGQ+PV+CV L NP  G  FASFGAHP F VALER++TELLQGR  + L+
Sbjct: 388 FPVVVRDASLGGQFPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSFEGLN 447

Query: 302 VFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFVDWNFSGTTEEEFATLMA 361
               PTF+   V+E  N   HFIDS+G+ISW  F   ADY F +W+FSGT EEE   L  
Sbjct: 448 DVPKPTFNSMAVSEPENFVEHFIDSTGVISWRFFSNKADYAFCEWDFSGTNEEEAKGLFG 507

Query: 362 IFNKEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETILSLPGSE 421
           I     KEVY+A++E LG  ACRI+VP  S++YP +DL   N +     RE IL+L    
Sbjct: 508 ILESLGKEVYVAEFEELGASACRILVPDYSEVYPVDDLIWDNTNKALDYREDILNL--HR 565

Query: 422 WEKEDYLNLIEQLDEEGFDDFTRVRELLGLATGSDNGWYTLRIGELKAMLALAGGDLEQA 481
              ++  +L+ +L+E   D++T +R L+G+    +  W  L I ELK ++ LA G  E+A
Sbjct: 566 LSDDELADLVNRLEESQLDNYTDIRTLIGIVFDENTVWGQLTIIELKILIYLALGAHEEA 625

Query: 482 LVWTEWTMEFNSSVFSPERANYYRCLQTLLLLAQEEDRQPLQYLNAFVRMYGADAVEAAS 541
           L   E  ++FN +  + +R  +Y+ +  +L +  +E+ +   ++  F RM+G + +    
Sbjct: 626 LELVEDFLQFNDN--TVQRGLFYQAMSAVLEVTLDEELELEDFIGNFTRMFGEEVMAQVV 683

Query: 542 AAMSGEAAFYGLQPVDSDLHAFAAHQSLLKAYEKLQRAK 580
            +++GE  F GL      L     H  L+++Y+KL +A+
Sbjct: 684 GSVNGEVRFSGLTETSMALEGIEPHLRLIESYKKLHQAR 722