Pairwise Alignments

Query, 643 a.a., DNA polymerase III subunit gamma/tau from Escherichia coli ECRC99

Subject, 909 a.a., DNA-directed DNA polymerase (RefSeq) from Shewanella amazonensis SB2B

 Score =  447 bits (1150), Expect = e-129
 Identities = 241/412 (58%), Positives = 292/412 (70%), Gaps = 12/412 (2%)

Query: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
           MSYQVLARKWRP  FA+VVGQ HVL AL N L   R+HHAYLF+GTRGVGKTS+ARL AK
Sbjct: 1   MSYQVLARKWRPANFAEVVGQSHVLHALTNALGQQRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
           GLNCE GITATPCG C  CREI +GRFVDLIE+DAASRTKV+DTR++LDNVQY P+RGRF
Sbjct: 61  GLNCEQGITATPCGQCSACREIAEGRFVDLIEVDAASRTKVDDTREILDNVQYRPSRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
           KVYLIDEVHMLS+ SFNALLKTLEEPPEHVKFLLATTDPQKLPVT+LSRCLQF+LKAL  
Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180

Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240
            QI+ QL  +L+ E +  +  AL LLA+AA GS+RDALSLTDQAIA G G+V    V  M
Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240

Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300
           LG +D  Q L+L +A+ + + E ++     A   G + + +L  +L LLH+I++ Q +PA
Sbjct: 241 LGAIDKGQILNLFDALCQGDIETLLTTARTAMGFGADADEVLRALLELLHQISLAQFAPA 300

Query: 301 ALG-NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
               +D  A  L     A+ + P  +QLYYQ LL GRK+LPYAPD   G+EM+LLRA+ F
Sbjct: 301 TASISDNGAAVLAW---AQALKPEQVQLYYQILLSGRKDLPYAPDPASGLEMSLLRAVGF 357

Query: 360 HPRMPLP-----EPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLP 406
            P  P+      E     ++   VAP+   T  +  PQ  +AP  A     P
Sbjct: 358 VPEKPVSRWQSGEGVSAAEALKLVAPS---TEGKSAPQADTAPNHAVVTETP 406



 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 36/118 (30%), Positives = 56/118 (47%)

Query: 523 WAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGS 582
           W   +  L +   V Q+A+N+      N + L L+  Q+HL    A  +L EALS   G 
Sbjct: 766 WYKLMGALEIGGRVRQLAVNSVCLAWSNPIPLVLKQDQKHLAAPVAIGQLNEALSKALGH 825

Query: 583 TVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEDSI 640
             E+ +   + P   TPL+ R   + E L+ AR ++  D  +  L +   A  D+DSI
Sbjct: 826 EAEIALEVGEVPGRETPLDIRARFHRELLSDARGALNTDPAVLRLMQQAGAWFDDDSI 883