Pairwise Alignments

Query, 643 a.a., DNA polymerase III subunit gamma/tau from Escherichia coli ECRC99

Subject, 1113 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella loihica PV-4

 Score =  457 bits (1176), Expect = e-132
 Identities = 244/452 (53%), Positives = 312/452 (69%), Gaps = 10/452 (2%)

Query: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
           MSYQVLARKWRP TF  VVGQ HVL AL N LS  R+HHAYLF+GTRGVGKTS+ARL AK
Sbjct: 1   MSYQVLARKWRPATFEQVVGQSHVLHALTNALSQNRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
           GLNCE G+TATPCG C +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF
Sbjct: 61  GLNCEQGVTATPCGQCASCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
           KVYLIDEVHMLSR SFNALLKTLEEPPEHVKFLLATTDPQ+LPVT+LSRCLQF+LK+L +
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQRLPVTVLSRCLQFNLKSLTL 180

Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240
           ++I  QL HIL +E + ++  A++LLA+AA GS+RDALSLTDQAIA G GQV    V  M
Sbjct: 181 DEICVQLGHILAQEQVGYDDGAVKLLAKAANGSMRDALSLTDQAIAFGAGQVRLTQVQTM 240

Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300
           LGT+D+   + L++A+ + + + +M +  +  + G +   +L  +L LLH+I + Q +P+
Sbjct: 241 LGTIDEHHVIVLLKALCDGDVDLLMKVTGDVLSFGADPHEVLRSLLELLHQITLTQFAPS 300

Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360
           A    ++    +++  A+ + P  +QLYYQ LL GR++LP+APD + G+EM LLRA+AF 
Sbjct: 301 AA--QLSQYAEQIKAFAKQLRPEQVQLYYQLLLNGRQDLPHAPDPKSGLEMALLRAIAF- 357

Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPE-TTSQVLAARQQL 419
                  PE P Q +   A + ++ P    P+       APT   P+ T   V  A   L
Sbjct: 358 ------VPEAPVQRWMGEAGSEILLPDTPLPELGKGEDVAPTSARPDGTVKPVKPAESVL 411

Query: 420 QRVQGATKAKKSEPAAATRARPVNNAALERLA 451
                A    K+E     +    N A++  L+
Sbjct: 412 NSQAEAEVEDKAEVEEKAKVEASNEASVAMLS 443



 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 11/258 (4%)

Query: 386  PTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNA 445
            P  V P+P      AP+  +P    QV    +   R   A + ++     +   + +++ 
Sbjct: 836  PPWVSPEPSLQAVTAPSDEVPNLAGQVDTQSESHARADAAAQIEQGLDELSLEDQSLDDQ 895

Query: 446  ALERLASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEK 505
            +L+  +   D   +  + S  + +            +P  Q+   V+ P A+ + +   +
Sbjct: 896  SLDDQS--LDDQSSEDLNSDDQGSNESGAFGNHPVQSPAAQE---VSAPSAVTEPVS--Q 948

Query: 506  TPELAAKLAAEAIERDA---WAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRH 562
            T ++A  +A E    D    W   +S L +   V Q+A+NA  +     + L L+ +Q+H
Sbjct: 949  TTQVAF-VADEITGHDTDLKWYRLMSALEIGGRVRQLAVNAVCKAFSEPLPLVLKPNQKH 1007

Query: 563  LNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADN 622
            L   GA  +L +ALS   G + ++       P   TPLE RQ  + E L QA + ++ D 
Sbjct: 1008 LAAPGAISQLEDALSKALGGSCQVAFSVGVEPERETPLEIRQRFHRELLEQAHQGLLQDE 1067

Query: 623  NIQTLRRFFDAELDEDSI 640
            NIQ L +   AE++ DS+
Sbjct: 1068 NIQWLTQVMQAEMEPDSL 1085