Pairwise Alignments

Query, 643 a.a., DNA polymerase III subunit gamma/tau from Escherichia coli ECRC99

Subject, 1040 a.a., DNA polymerase III, subunits gamma and tau (RefSeq) from Shewanella sp. ANA-3

 Score =  460 bits (1184), Expect = e-133
 Identities = 256/503 (50%), Positives = 333/503 (66%), Gaps = 15/503 (2%)

Query: 1   MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 60
           MSYQVLARKWRP TF  +VGQ HVL AL N L+  R+HHAYLF+GTRGVGKTS+ARL AK
Sbjct: 1   MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK 60

Query: 61  GLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRF 120
           GLNCE G+TA+PCGVC +C EI QGRFVDLIE+DAASRTKV+DTR+LLDNVQY P RGRF
Sbjct: 61  GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF 120

Query: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
           KVYLIDEVHMLSR SFNALLKTLEEPP+HVKFLLATTDPQKLPVT+LSRCLQF+LK+L  
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180

Query: 181 EQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 240
           ++I  QL+HIL +E +  E  AL LLA+AA GS+RDALSLTDQAIA G G V    V +M
Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240

Query: 241 LGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA 300
           LG++D+   L L++A+ +A+   +M    +  A G + + +L  +L LLH+I + Q +PA
Sbjct: 241 LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA 300

Query: 301 ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 360
           A    + + ++  +  A  + P  +QLYYQ LL GRK+LP+APD + G+EM LLRA+AF 
Sbjct: 301 AAQQSLYSAQI--QAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFV 358

Query: 361 PRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQVLAARQQLQ 420
           P  P+   +V  +  A V+  A    +  P       +QA    + E  + + A R    
Sbjct: 359 PEKPVKRWQV--EDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERDS-- 414

Query: 421 RVQGATKAKKSEPAAATRARPVNNAAL--ERLASVTDRVQARPVPSALEKAP-----AKK 473
             Q   +A  SEP A +     +  AL  E + +V D +      +A   A      ++ 
Sbjct: 415 --QTLPQAAISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQA 472

Query: 474 EAYRWKATTPVMQQKEVVATPKA 496
            +  + A    + + E ++TP+A
Sbjct: 473 HSQGFGANAETVSRTEALSTPEA 495



 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 77/279 (27%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 367  EPEVPRQSFAPVAPTAVMTPTQVPP---QPQSAPQQ--APTVPLPETTSQVLAARQQLQR 421
            E E+  +S + V PT  + P   PP    P +A  +  AP   +   T   +AA+  ++ 
Sbjct: 745  EAELHLESQSNVTPTPPLDPNDRPPWEEAPVAAMDETHAPAASVNLQTESPVAAQTAVEH 804

Query: 422  VQGATKAKKSEPAAATRARPVNNAALERLASVTDRVQARPVPSALEKAPAKKEAYRWKAT 481
            +  A  A +  P      R V   ALE+ A        +       + P  KE  + K T
Sbjct: 805  LGAAPVAAQISPTDREATRVVQ--ALEQAAGQESEPATQSPEPNTPQQPQAKELTQPK-T 861

Query: 482  TPVMQQKEVVATPKALKKALEHEKTPELAAKLAAEAIERDAWAAQVSQLSLPKLVEQVAL 541
             P  QQ   V +  +            LA  +    ++   W   ++ L +   V Q+A+
Sbjct: 862  QPQTQQPASVQSQSSETVQPTSSTALALAQSITGHPLDLH-WYKLMASLEIGGRVRQLAV 920

Query: 542  NAWKEESDNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLE 601
            N+  +   N + L L+  Q+HL    A ++L +AL+   G+  ++ +V   +PA  TPLE
Sbjct: 921  NSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALGNPRQVEVVIGTDPARETPLE 980

Query: 602  WRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEDSI 640
             R+  ++E L QAR+S++ D+N+Q L   F AELD+D++
Sbjct: 981  MRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTL 1019