Pairwise Alignments

Query, 181 a.a., transcription termination/antitermination protein NusG from Escherichia coli ECRC99

Subject, 183 a.a., transcription antitermination protein NusG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (728), Expect = 4e-82
 Identities = 139/182 (76%), Positives = 158/182 (86%), Gaps = 2/182 (1%)

Query: 1   MSEAP--KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRR 58
           M+EA   KKRWYVVQAFSG+EGRV  SL E+IK+H ME  FGEV+VPTEEV+E+R GQRR
Sbjct: 1   MTEAKEAKKRWYVVQAFSGYEGRVCKSLIEYIKMHGMEQYFGEVLVPTEEVIEMRAGQRR 60

Query: 59  KSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQV 118
           KSERKFFPGYVLVQM MND SWHLV+S+PRV+GFIGGTSDRPAPISD+E DAI+ RLQ+ 
Sbjct: 61  KSERKFFPGYVLVQMEMNDDSWHLVKSIPRVLGFIGGTSDRPAPISDREADAILRRLQET 120

Query: 119 GDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQV 178
              P  + +FEPGE+VRV DGPFADFNG VEEVDY+KSR+KVSV IFGR+TPVELDFSQV
Sbjct: 121 TASPTHRVIFEPGEVVRVCDGPFADFNGTVEEVDYDKSRVKVSVMIFGRSTPVELDFSQV 180

Query: 179 EK 180
           EK
Sbjct: 181 EK 182