Pairwise Alignments

Query, 181 a.a., transcription termination/antitermination protein NusG from Escherichia coli ECRC99

Subject, 180 a.a., transcription anti-termination protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  144 bits (363), Expect = 9e-40
 Identities = 74/178 (41%), Positives = 116/178 (65%), Gaps = 6/178 (3%)

Query: 6   KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVVEIRGGQRRKSERKFF 65
           +K+WYV++A SG E +V   L   +K  ++ +   +V++PTE+V ++R G++   ER + 
Sbjct: 5   EKKWYVLRAISGKEAKVKEYLEADLKNSDLGEYVSQVLIPTEKVYQVRNGKKIVKERSYL 64

Query: 66  PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIM---NRLQQVGDKP 122
           PGYVLV+  +     H +R+ P V+GF+GG S++P P+   EV+ I+   + LQ+ G++ 
Sbjct: 65  PGYVLVEAALVGEVAHHLRNTPNVIGFLGG-SEKPVPLRQSEVNRILGTVDELQETGEE- 122

Query: 123 RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180
                +  GE V+V  GPF+ F+G++EEV+ EK +LKV V IFGR TP+EL F QVEK
Sbjct: 123 -LNIPYVVGETVKVTFGPFSGFSGIIEEVNSEKKKLKVMVKIFGRKTPLELGFMQVEK 179