Pairwise Alignments

Query, 162 a.a., transcription/translation regulatory transformer protein RfaH from Escherichia coli ECRC99

Subject, 165 a.a., transcription/translation regulatory transformer protein RfaH from Vibrio cholerae E7946 ATCC 55056

 Score =  143 bits (360), Expect = 2e-39
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 3/162 (1%)

Query: 1   MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60
           M+ WYLLYCKRG+ QRA+ HLE Q+V C  P + +EKI+RGKR  V EPLFP+Y+FV FD
Sbjct: 1   MKRWYLLYCKRGEQQRAKMHLENQSVECFYPEVCVEKILRGKRQMVQEPLFPSYMFVRFD 60

Query: 61  PEVIHT-TTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI--VDPATPYPGDKVI 117
            E   + TT+ +TRGV  FVR G  P  +   +I+QL     + +       P  G  V 
Sbjct: 61  FENGPSFTTVRSTRGVVDFVRLGPHPRELQGDLIYQLKQLDCEQLKHATKQLPEKGQTVR 120

Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159
           +  G F G +AI+ EPDG+ RS++L+ +I++++  S++NT++
Sbjct: 121 VARGQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSIENTDW 162