Pairwise Alignments

Query, 162 a.a., transcription/translation regulatory transformer protein RfaH from Escherichia coli ECRC99

Subject, 166 a.a., transcriptional activator rfaH, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 92.8 bits (229), Expect = 2e-24
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 4/152 (2%)

Query: 1   MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60
           M++WYLLYCK     RAQ++L  Q +    PM++ EK  RG++     PLFPNYLF+ FD
Sbjct: 1   MKAWYLLYCKPRSEVRAQQNLALQNLETYLPMVSEEKSQRGQKRICRVPLFPNYLFINFD 60

Query: 61  PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK---PKDIVD-PATPYPGDKV 116
           P       +++TRGVS  V        +   +IH + + +    + ++D P     G+K+
Sbjct: 61  PSQTSVKQVHSTRGVSRIVNCQEKMTPIDDRIIHAIRMKELTPSQSVLDTPLELKTGEKI 120

Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINK 148
              +G F   +AIF E     R  +L N++ +
Sbjct: 121 RFKDGPFADLEAIFQEKCPNKRCHVLFNIMGQ 152