Pairwise Alignments

Query, 477 a.a., RNA polymerase factor sigma-54 from Escherichia coli ECRC99

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  531 bits (1369), Expect = e-155
 Identities = 273/507 (53%), Positives = 364/507 (71%), Gaps = 35/507 (6%)

Query: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE 60
           MK  L L++ QQL MTPQLQQAIRLLQLSTL+LQQE+Q+AL+SNP+LE+ +  ++ D+ +
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFDSSD 60

Query: 61  ---------------------------TQDSETLDTADALEQKEMPEELPLDASWDTIYT 93
                                      +   E+ D  D  E+  +P ELP+D +W+ IY 
Sbjct: 61  PMAEAADRPGDTGTEKSSSQESTYEEPSHSGESADDGDWGER--IPSELPVDTAWEDIYQ 118

Query: 94  AGTPSGTSGDYIDDELPVYQGETTQ--TLQDYLMWQVELTPFSDTDRAIATSIVDAVDDT 151
               S  S D  DDE   +   T+   +LQ +L+WQ+ L P SDTDR IAT+++D ++D 
Sbjct: 119 TSASSLPSND--DDEWD-FTSRTSNGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQ 175

Query: 152 GYLTVPLEDILESMGDE-EIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTT 210
           GYL   L++I++S   E EI++DEVE VL+RIQ+F+P G+ A+DLR+CLL+QL Q  + T
Sbjct: 176 GYLEETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLLLQLRQLSERT 235

Query: 211 PWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPE 270
           PWL EA+ ++SD+LD+L + D+  LMR  +LKED L++ + LIQSL+PRPG  I+  EPE
Sbjct: 236 PWLSEAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRPGSQIEASEPE 295

Query: 271 YVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLI 330
           YV+PDV+VRKHN  W VELN +++PRL++N  YA     A +  D+ F+R+ LQ+A+W I
Sbjct: 296 YVVPDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFI 355

Query: 331 KSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYL 390
           KSL SRN+TL++V+  IVE Q+AF E G+E MKP+VL DIA+AV MHESTISRVTTQKY+
Sbjct: 356 KSLLSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYM 415

Query: 391 HSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG 450
           H+PRGI+ELKYFFSSHV+T  GGE SSTAIRA++KKL+AAEN  KPLSDSK+  LL  QG
Sbjct: 416 HTPRGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQG 475

Query: 451 IMVARRTVAKYRESLSIPPSNQRKQLV 477
           I VARRTVAKYRESL I PS++RK+L+
Sbjct: 476 IQVARRTVAKYRESLGIAPSSERKRLL 502