Pairwise Alignments

Query, 477 a.a., RNA polymerase factor sigma-54 from Escherichia coli ECRC99

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  288 bits (738), Expect = 2e-82
 Identities = 183/509 (35%), Positives = 285/509 (55%), Gaps = 42/509 (8%)

Query: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEE-IDTR 59
           +   L LR SQ L MTPQL Q+I+LLQ++ LEL   + Q +E NPLLE     E  I  R
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 60  ETQDSETLDTADALEQKEMPEEL--------------PLDASWDTIYTAGTPSGTS---- 101
           E       +T    ++     +L               LDA +  ++   T    +    
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADAPE 122

Query: 102 -----------GDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDD 150
                      GD    +L  + G   +TL++ L  Q+     + +DR IA   +D +DD
Sbjct: 123 LLGQWKSMPGAGDAEGYDLDDFVGGR-KTLRETLAEQLPFALSAVSDRLIARYFIDQLDD 181

Query: 151 TGYLTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTT 210
            GYL   L +  E++G      ++V  VL  +Q+FDP GV A+ L +CL IQL   ++  
Sbjct: 182 AGYLHADLAETAETLGAAG---EDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNRLD 238

Query: 211 PWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPE 270
           P +E     +  +L+LLA  DF +L ++  + E+ L + +  I+ LDP+PG S +TG  E
Sbjct: 239 PAMEA----LVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFE 294

Query: 271 YVIPDVLVRKH-NGHWTVELNSDSIPRLQINQHYASMCNNA--RNDGDSQFIRSNLQDAK 327
            +IPDV+VR   +G W VELN D++PR+ +N  Y +  + +  +N G+  F+   LQ+A 
Sbjct: 295 AIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNAN 354

Query: 328 WLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQ 387
           WL +SL+ R  T+++V+  IV QQ AF   G  +++P+ L  +A A++MHEST+SRVT+ 
Sbjct: 355 WLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSN 414

Query: 388 KYLHSPRGIFELKYFFSSHVNTEGGGEA-SSTAIRALVKKLIAAENPAKPLSDSKLTSLL 446
           KY+ +PRG+FELKYFF+  + +   G+A S+ ++R  ++ +I  E+    LSD  +  +L
Sbjct: 415 KYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVL 474

Query: 447 SEQGIMVARRTVAKYRESLSIPPSNQRKQ 475
            + G+ +ARRTVAKYRE++SIP S QR++
Sbjct: 475 KQAGVDIARRTVAKYREAMSIPSSVQRRR 503