Pairwise Alignments

Query, 477 a.a., RNA polymerase factor sigma-54 from Escherichia coli ECRC99

Subject, 500 a.a., Sigma-54 (RpoN) (NCBI) from Rhodospirillum rubrum S1H

 Score =  335 bits (858), Expect = 3e-96
 Identities = 201/502 (40%), Positives = 298/502 (59%), Gaps = 38/502 (7%)

Query: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHE---EID 57
           M   L LR +Q L MTPQLQQAI+LLQLS +EL   + Q LE NPLLE+ D+ +   E D
Sbjct: 3   MSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLERDDSADVSPEPD 62

Query: 58  TRETQDSETLDTADALEQKEMP---EELPLDASWDTIYTAGTPS---------------- 98
            RE    E  D+A+      +P    + PLD  ++T    GTPS                
Sbjct: 63  RRE----ERADSAETQVLDVVPGNTTDAPLDQDFNTAAEEGTPSDSWAEAGGGFDAGTPW 118

Query: 99  --GTSGDYIDDELPVYQGET-TQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLT 155
             GTSG + D +  + Q     ++L+D+L  Q+ L   +  DR IA  ++  +DD GYL 
Sbjct: 119 GSGTSGSFDDSDGGLEQMVAGPRSLRDHLSDQITLDLKTSADRLIAHHLMGMLDDAGYLI 178

Query: 156 VPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEE 215
             L+++ +S+G     + EVE VL R+Q  DP G+ A+ L++CL IQL+  ++  P ++ 
Sbjct: 179 GALDEVADSLG---CSLAEVERVLGRLQAMDPPGLFARSLKECLAIQLADLNRLDPAMQA 235

Query: 216 ARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPD 275
               + DHL++L   D   L+++  +  + +   +  I++LDP+P    +    + VIPD
Sbjct: 236 ----LLDHLEMLGRRDIAGLLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQPVIPD 291

Query: 276 VLVRKHN-GHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE 334
           VL+R    G W VELNS+++PR+ IN  Y +  + + +     F+  NL  A WL+KSL+
Sbjct: 292 VLMRPDPAGGWLVELNSETLPRVLINNRYHARLSRSGDKETRTFLSENLATANWLVKSLD 351

Query: 335 SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPR 394
            R +T+L+V+  +V QQ AFF  G  +++P++L DIA+A+EMHEST+SRVT+ KY+ SPR
Sbjct: 352 QRANTILKVATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSRVTSNKYIASPR 411

Query: 395 GIFELKYFFSSHVNTEGGGEA-SSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMV 453
           GIFELKYFF+  +    GGE+ S+ A+R  ++ LI AE+P + LSD KL  +L   GI +
Sbjct: 412 GIFELKYFFTQAIGAADGGESHSAEAVRDRIRSLIEAESPDQVLSDDKLVDILRTDGIDI 471

Query: 454 ARRTVAKYRESLSIPPSNQRKQ 475
           ARRTVAKYRE + I  S +RK+
Sbjct: 472 ARRTVAKYREGMRIASSVRRKK 493