Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECRC99

Subject, 360 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  268 bits (685), Expect = 2e-76
 Identities = 157/335 (46%), Positives = 215/335 (64%), Gaps = 4/335 (1%)

Query: 7   LTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFL 66
           LTYL+GKP  +  ++ +  DF V E L F PDGEGEH L+ I K+G NT  VA+ +++F 
Sbjct: 4   LTYLYGKPAVSADIRTHNSDFQVKEILPFLPDGEGEHHLLHIRKDGLNTAQVAEMISRFA 63

Query: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGAL 126
           K+H +EV+FAGQKDK+A+TEQW   R+PGKE PD +A   E  QVL +ARH +KLR GAL
Sbjct: 64  KVHPKEVTFAGQKDKNAITEQWFGVRIPGKETPDWAAMSNEQMQVLSFARHGKKLRTGAL 123

Query: 127 KGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVR 186
            GN FTLVLR VS+ + +  RL  +   GVPNYFG QRFG  G NL  A R       V+
Sbjct: 124 SGNRFTLVLRNVSDPEALVARLELVRDGGVPNYFGEQRFGHDGGNLVKA-RQMFEGRKVK 182

Query: 187 DRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQR 246
           DRNKRS +LSA RS LFNQ+ + RL +      ++GD + L+G  S+F A + +   L +
Sbjct: 183 DRNKRSLYLSAVRSELFNQVASARLARFG-TAPIEGDCVMLSGSRSFFTAESWD-DSLNK 240

Query: 247 RVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQ 306
           R+ ++++ ++A L G GE   + +A A E + +AA    +  L +E +   RRA+LL P+
Sbjct: 241 RLAEQDIQLSAPLWGRGEQLAKGDAAALESSVLAAYELERNGLEKEGLTQERRALLLRPE 300

Query: 307 QLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT 341
           QLS+   D   + + F LPAG+FATSV+REL   T
Sbjct: 301 QLSFK-LDGDALTLDFCLPAGAFATSVLRELCEYT 334