Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine(13) synthase TruD from Escherichia coli ECRC99

Subject, 375 a.a., tRNA pseudouridine synthase D, TruD (RefSeq) from Shewanella sp. ANA-3

 Score =  262 bits (669), Expect = 1e-74
 Identities = 159/343 (46%), Positives = 207/343 (60%), Gaps = 8/343 (2%)

Query: 7   LTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFL 66
           L YL+GKP  T  L+    DF+V E L F P GEGEH LV I K+G NT  VA+ LAKF 
Sbjct: 4   LHYLYGKPTATADLRTVNSDFIVKEILPFSPSGEGEHHLVHIRKDGLNTVQVAEMLAKFA 63

Query: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGAL 126
           K+H +EV++AGQKDK+A+TEQW   R+PGKE P  S    E   +L  +RH +KLR+GAL
Sbjct: 64  KVHPKEVTYAGQKDKNAITEQWFGIRIPGKETPAWSELNSERLTILSSSRHSKKLRIGAL 123

Query: 127 KGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVR 186
            GN F L LR V+N +D+  R+  +   GVPNYFG QRFG  G NL    R       V+
Sbjct: 124 LGNRFILTLRNVTNVEDIISRIEKVSQIGVPNYFGEQRFGHDGKNLVMG-RQMLAGKKVK 182

Query: 187 DRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQR 246
           DRNKRS +LSA RS LFN +V+ RL       +  GD + LAG  S+FV    +LV L+R
Sbjct: 183 DRNKRSMYLSAVRSNLFNTVVSYRLANHGTKPLA-GDCVMLAGSKSFFVTPEWDLVVLKR 241

Query: 247 RVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQ 306
            + +K++ ++A L G G+   Q EA   E  A+A  +E    L    +E  RR +LL PQ
Sbjct: 242 LI-EKDIQLSAPLWGRGKMLPQGEAAEVETLAMAELSEDCYGLEHAGLEQERRPLLLEPQ 300

Query: 307 QLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE 349
            L +   +D  V + F LPAGSFATS++REL+    DY  + E
Sbjct: 301 GLKYEQTEDGLV-LEFILPAGSFATSLLRELV----DYQDVKE 338