Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 228 a.a., Flagellar biosynthesis pathway, component FliR from Pseudomonas stutzeri RCH2

 Score =  107 bits (267), Expect = 2e-28
 Identities = 62/249 (24%), Positives = 123/249 (49%), Gaps = 32/249 (12%)

Query: 8   QWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPANDVPVFS 67
           Q+L  L  Y+WP  R++A+ S AP+ + +++  RV++ LA+ +T                
Sbjct: 5   QYLQSLLAYWWPFCRIMAVFSLAPMFNHKAISVRVRILLALALT---------------- 48

Query: 68  FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMP-VLA 126
                         + LG  +   F      G+++  Q+GLS A F DP + ++   ++ 
Sbjct: 49  --------------LVLGLALLLVFTVFTLIGDVVSTQLGLSMAVFNDPMNGVSSASIIY 94

Query: 127 RIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLML 186
           ++  +L  LLF   +GHL  +S++  +F   PIG   L  +    +  + + +    L++
Sbjct: 95  QLYFILLALLFFAVDGHLVTVSIIYQSFVYWPIGSG-LFYDGLQTIAWSMAWVISAALLI 153

Query: 187 ALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIAPFCEHLFSE 246
           ALP++  +  +    GLLNR++P +++F +GFP+ +  G+SL+   +P  A    HL  +
Sbjct: 154 ALPIVFCMTLVQFCFGLLNRISPAMNLFSLGFPMAILAGLSLIYLTLPNFAEAYLHLTRD 213

Query: 247 IFNLLADII 255
           + + +  ++
Sbjct: 214 LLDKIGVLL 222