Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 258 a.a., flagellar biosynthetic protein FliR from Pseudomonas stutzeri RCH2

 Score =  186 bits (472), Expect = 4e-52
 Identities = 98/230 (42%), Positives = 150/230 (65%), Gaps = 2/230 (0%)

Query: 1   MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA 60
           ML++++ Q   W+  +  PL R+ AL+ + PI+  + VP RV+L LA+ I   + P+LP 
Sbjct: 1   MLELSNAQIGGWVGQFLLPLFRIAALLMSMPIIGTQLVPVRVRLYLALAIALVLVPTLPP 60

Query: 61  NDV-PVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASH 119
             V    S  +L L  +Q+LIG+ LGF +Q  F     +G+++ +QMGL FA+ VDPA+ 
Sbjct: 61  MPVVESLSLASLLLIAEQLLIGVMLGFVLQLFFHVFIVSGQMLAMQMGLGFASMVDPANG 120

Query: 120 LNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLI 179
           +++PVL +  +ML +LLFL+ NGHL ++ +L ++F TLP+GG  L++N F  +      +
Sbjct: 121 ISVPVLGQFFNMLVILLFLSVNGHLVVLEILAESFVTLPVGG-GLSTNHFWEVAGKLGWV 179

Query: 180 FLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLM 229
              GL+L LP IT LL +NLA GL+ R APQL+IF IGFPLTL +G+ ++
Sbjct: 180 LGAGLLLVLPAITALLVVNLAFGLMTRAAPQLNIFSIGFPLTLVLGLIIV 229