Pairwise Alignments

Query, 261 a.a., flagellar type III secretion system protein FliR from Escherichia coli ECRC99

Subject, 260 a.a., flagellar type III secretion system protein FliR from Vibrio cholerae E7946 ATCC 55056

 Score =  161 bits (408), Expect = 1e-44
 Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 10  LSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA--NDVPVFS 67
           L +++ YFWP  R+ A++    +   R VP RV+L L + +TFA+ P++PA  +D+ + S
Sbjct: 9   LDFIANYFWPYTRIAAMLMVMTVTGARFVPARVRLYLGLALTFAVMPAIPAVPSDIALLS 68

Query: 68  FFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHLNMPVLAR 127
                +  +QI+IG+A+G   QF        G+I+G+Q  L FA+ VDPA+  N P+L +
Sbjct: 69  LQGFMITFEQIVIGVAMGMVTQFLVQIFVMLGQILGMQSSLGFASMVDPANGQNTPLLGQ 128

Query: 128 IMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIFLNGLMLA 187
           +  +LA L FL  +GHL +I L+V +F +LPIG   L +  F  L     ++F   L ++
Sbjct: 129 LFMLLATLFFLVSDGHLKMIQLVVFSFKSLPIGSGSLTTVDFRELALWLGIMFKASLAVS 188

Query: 188 LPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISL 228
           L  I  LLT+NL+ G++ R APQL+IF +GF   L VG+ L
Sbjct: 189 LSGIIALLTVNLSFGVMTRAAPQLNIFSLGFSFALLVGLLL 229