Pairwise Alignments

Query, 308 a.a., flagellar motor protein MotB from Escherichia coli ECRC99

Subject, 339 a.a., flagellar motor protein MotB from Pseudomonas fluorescens SBW25-INTG

 Score =  215 bits (547), Expect = 1e-60
 Identities = 122/313 (38%), Positives = 183/313 (58%), Gaps = 27/313 (8%)

Query: 9   IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68
           I++KR K  + G   G+WKIA+ADF TAMMAFFLV+WL+S ++P++ I IA YF+ P+  
Sbjct: 7   IIIKRVKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYFKDPIGF 66

Query: 69  AVTGGDRISNSESPIPGGGDDYTQSQGEVN--------------KQPNIEELKKRMEQSR 114
           + +G   +      I  GG      +  +N              ++  +E + +++EQ R
Sbjct: 67  SESGTPFV------IDLGGSPQLAPERTINPEVKTEAPQEKIPIERDTVEAMAEQVEQER 120

Query: 115 LRKLRGDLDQLIESDPKLRVLRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRD 174
           L  L  +L   +E +P+L   +  +  ++  +GLRIQI D+ NRPMF +GSA ++PY  D
Sbjct: 121 LELLLQELQTKVEENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFED 180

Query: 175 ILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDSGK 234
           IL A+A  +  +PN+IS+SGHTD  PYA G+  + NWELSA+RANA+RR L+ G     +
Sbjct: 181 ILLAMADTIKAVPNKISISGHTDAKPYA-GQGDFGNWELSANRANAARRALVAGSYPDPQ 239

Query: 235 VLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHENAESQNEPVSALEKPEVA 294
           V RVVG A++     + P + +NRRI ++VL K+A++AI     E   +P      P   
Sbjct: 240 VARVVGFASSQLFDHKDPFNPINRRIDIVVLTKKAQRAI-----EGDQQPAPP-PTPGAG 293

Query: 295 PQVSVPTMPSAEP 307
               VPT P+A P
Sbjct: 294 APGEVPTDPNAIP 306