Pairwise Alignments

Query, 308 a.a., flagellar motor protein MotB from Escherichia coli ECRC99

Subject, 347 a.a., flagellar motor protein from Pseudomonas aeruginosa PA14

 Score =  214 bits (544), Expect = 3e-60
 Identities = 122/317 (38%), Positives = 185/317 (58%), Gaps = 26/317 (8%)

Query: 9   IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68
           I+VKR K  + G   GSWKIA+ADF TAMMAFFLV+WL+S ++P++   I+ YF+ P+  
Sbjct: 7   IIVKRVKRYAAGHHGGSWKIAFADFATAMMAFFLVLWLLSSATPEQKKAISGYFQDPIGF 66

Query: 69  AVTGGDRI---SNSESPIPGGG-DDYTQSQGEVNKQ------------PNIEELKKRMEQ 112
           + +    +     + +P P    +   Q+Q + N+                E L +++E+
Sbjct: 67  SESASPYVIDLGGTPTPAPDKTLNPQVQAQPDSNESRISPEQDHQVNADQAENLAEQVER 126

Query: 113 SRLRKLRGDLDQLIESDPKLRVLRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYM 172
            RL  L  +L   ++ +P L+  +  +  ++ ++GLRIQI+D+ NRPMF  GSA ++PY 
Sbjct: 127 ERLALLLQELQNKVDENPMLKDFKDQIHFEITRDGLRIQIVDAANRPMFDLGSARLQPYF 186

Query: 173 RDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLDS 232
            DIL A+A  +  +PN+IS+SGHTD  PYA G   + NWELSA+RANA+RR L+ GG   
Sbjct: 187 EDILLAMAETIRQVPNKISISGHTDAKPYA-GNGDFGNWELSANRANAARRALVAGGYPE 245

Query: 233 GKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHEN---------AESQNE 283
           G++ +VVG A+     D+ P + VNRRI ++VL ++A++AI  E          A    +
Sbjct: 246 GQIAQVVGYASARLFDDKDPLNPVNRRIDIVVLTRKAQKAIEGETGAPEASAPAAAPGEQ 305

Query: 284 PVSALEKPEVAPQVSVP 300
           P  A E P    Q S+P
Sbjct: 306 PKPAAEAPAAGAQPSLP 322