Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Escherichia coli ECRC99

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score =  693 bits (1788), Expect = 0.0
 Identities = 364/663 (54%), Positives = 470/663 (70%), Gaps = 18/663 (2%)

Query: 1   MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYAR 60
           M L+IAEKPSL RAIADVLPKPH+KG+G+I   NG  V+WCIGHLLEQA+PD+YD  +  
Sbjct: 1   MILYIAEKPSLGRAIADVLPKPHKKGEGYITAANGDTVSWCIGHLLEQAEPDSYDPAFKS 60

Query: 61  WNLADLPIVPEKWQLQPRPSVTKQLNVIKRYLHEASEIVHAGDPDREGQLLVDEVLDYLQ 120
           W+   LPIVP++W++ P+     QL+V+++ + +AS++V+AGDPDREGQLLVDEV+ YL 
Sbjct: 61  WSFDHLPIVPQQWKMTPKSKTRGQLSVLRKLVKQASQLVNAGDPDREGQLLVDEVIAYLG 120

Query: 121 LAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAY 180
           +  +K +Q QR L++DLNPQAV+RA+ +LRSN EF+PL  SALAR+RADWLYG+NMTRAY
Sbjct: 121 VKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLSTSALARSRADWLYGMNMTRAY 180

Query: 181 TILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW 240
           T+ GR  GYQGVLSVGRVQTP+LGLVVRRDE IE+FV+K F+EV A++ T     F A W
Sbjct: 181 TLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKW 240

Query: 241 QPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE 300
           QPSEAC+PY DEEGR+L R LAE+VV RI+ QPA VT    K + +  PLP++LS+LQI+
Sbjct: 241 QPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQID 300

Query: 301 AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLP 360
           AAKRFG+SA+ VLD CQ LYE HKLITYPRSD RYLP+E  A   +V+ A+   A +L  
Sbjct: 301 AAKRFGMSAKTVLDTCQSLYEKHKLITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTA 360

Query: 361 QPVVDPDIR--NRCWDDKKVDAHHAIIPTARSSAIN-LTENEAKIYNLISRQYLMQFCPD 417
           Q    PD++  ++ W+D KVDAHHAI+PT + + ++ LT+ E +IY  ++RQYL QF P 
Sbjct: 361 Q-CAAPDLKIVSKAWNDAKVDAHHAIVPTEKVANLSALTQAEKQIYLQLARQYLAQFYPV 419

Query: 418 AVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDG------TPLPVVAKGD 471
             + +  +E++IA G F  KA+     GW+ L   K  D++ DG        LP + KG 
Sbjct: 420 YRYHETQVEVEIAGGHFHTKAKQEIALGWKQLF-PKRSDDKTDGEGDEALAQLPPLHKGQ 478

Query: 472 ELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGI 531
            L   +GE++E+QTQPP+ FTDATLLSAMTGI+R+V + +++KIL+ TDGLGTEATRAGI
Sbjct: 479 MLHSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGI 538

Query: 532 IELLFKRGFLIKKGRYIHSTDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDF 591
           IELLFKRGFL ++G+ I ST  G+ L +SLPE AT PDMTA WES L  IS K+ +Y  F
Sbjct: 539 IELLFKRGFLARQGKSIVSTPVGRGLINSLPESATTPDMTALWESHLDAISRKEAKYLSF 598

Query: 592 MQPLVGTLYQLIDQAKRTPVRQFRGIVAP-------GSGGSADKKKAAPRKRSAKKSPPA 644
           M PLV +L  LI QA     +  +G+ AP       G G        A  K S  K   A
Sbjct: 599 MAPLVESLNGLIMQAGAQLPKALQGVEAPKRSFKKRGYGNRRGTATGAKGKASGAKKTAA 658

Query: 645 DEA 647
             A
Sbjct: 659 RAA 661