Pairwise Alignments

Query, 653 a.a., DNA topoisomerase III from Escherichia coli ECRC99

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  216 bits (549), Expect = 5e-60
 Identities = 141/409 (34%), Positives = 214/409 (52%), Gaps = 20/409 (4%)

Query: 223 EVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDK 282
           E+ A      D+RF  +W       P    E R+     A+ +    +G+  IV S   +
Sbjct: 313 EIAAPEAAANDDRFRGVWH-----RPPDRRETRVDSGEEADAIATACTGKLGIVESVQGR 367

Query: 283 RESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFA 342
             ++  PLPF L+ LQ EA  RFG SA++ L   Q LYET KLITYPR+D R+L +E F 
Sbjct: 368 AGTQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRTDSRHLTKELFG 427

Query: 343 GRHAVMNAISVHAPD---LLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAI-NLTEN 398
                + A+    P+   L    +     R  C DD+KV  HHAIIPTAR   +  L+  
Sbjct: 428 EILNHLRAVHHLYPEETMLAVGRIKSGKARFACVDDRKVTDHHAIIPTARKGNLTQLSAP 487

Query: 399 EAKIYNLISRQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEE 458
           E  IY+++ R+ +  FCP+A F    + + + +  F+AK +   + GW  +    E    
Sbjct: 488 ERNIYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKDKGWMVV----EPWRT 543

Query: 459 NDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRA 518
            + TPLP + KG +LL      V+RQT+ P HFTDA+LL+AM    R V+D  L++ ++ 
Sbjct: 544 AEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETAGRLVEDDALRQAMKE 603

Query: 519 TDGLGTEATRAGIIELLFKRGFLIKKGRYIHSTDAGKALFHS----LPEMATRPDMTAHW 574
             GLGT ATRA +IE L  RG++ K+G+ + +TD G  +  +    LP++A+ P++T  W
Sbjct: 604 R-GLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTTLLPDVAS-PELTGQW 661

Query: 575 ESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQ-FRGIVAPGS 622
           E  L  I      Y  FM+ +  +++  + + +   +R   R I A  S
Sbjct: 662 EKRLKDIEAGADSYPAFMRSIRESVWHGVHRIRNRDIRPLLRDIAARNS 710



 Score =  139 bits (351), Expect = 4e-37
 Identities = 87/227 (38%), Positives = 138/227 (60%), Gaps = 14/227 (6%)

Query: 3   LFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQPDAYDSRYA-RW 61
           L IAEKPS+AR IA ++    R+  G++E G   +V+W +GHL+  A+P+  D  +A RW
Sbjct: 5   LIIAEKPSVAREIAPLVGAQGRRA-GYLE-GPDHLVSWAVGHLVGIAEPEEQDEAWAGRW 62

Query: 62  NLADLPIVPEKWQLQPRPSVTKQLNVIKRYLHE--ASEIVHAGDPDREGQLLVDEVLDYL 119
            L  LP++P ++QL+  P    Q +V++R L +   + IV+A D  REG+L+   +  YL
Sbjct: 63  TLEQLPMLPPRFQLRVLPETADQFSVLQRLLLDDRVTGIVNATDAGREGELIFRRI--YL 120

Query: 120 QLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRA 179
               +K   V+R   +D+  + + +++ RL  + E   L ++A ARA ADWL G+N +R 
Sbjct: 121 VAGCDK--PVRRLWASDMTEEGLRKSLARLLPDEEKRNLGLAAFARAEADWLVGMNFSRL 178

Query: 180 YTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKA 226
           +T+        G++SVGRVQTPVL L+  R  +IE+F  +DF+ V+A
Sbjct: 179 FTVKSG-----GLVSVGRVQTPVLCLLADRRRDIEHFTPQDFWTVEA 220