Pairwise Alignments

Query, 334 a.a., L,D-transpeptidase LdtE from Escherichia coli ECRC99

Subject, 304 a.a., ErfK/YbiS/YcfS/YnhG family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  255 bits (651), Expect = 1e-72
 Identities = 141/307 (45%), Positives = 194/307 (63%), Gaps = 10/307 (3%)

Query: 1   MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDT 60
           M R + L LTL+  F ++ A  A +YPLP + SRLVG+N  YTV EG   L+ IA +F  
Sbjct: 3   MLRTTALLLTLV--FPSLSAL-ATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQL 59

Query: 61  AAMLILEANNTIAP-VPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQV 119
               +LEAN  + P +P PG+ + IP QL+LP+APR+GI++N+AE+RLYYYP G+N V+V
Sbjct: 60  GLSNLLEANPGVDPFLPTPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEV 119

Query: 120 YPIGIGLQGLETPV-METRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGR 178
            PIGIG  G +TP    T V +K  NPTWTPT  IR+    RG  LP V PAGP+NP+G 
Sbjct: 120 LPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGL 179

Query: 179 YALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVK 238
           YAL + +    Y IHGT+A   +GLRVS GC+R+   DI+ LF +V  GT V+ +N+P+K
Sbjct: 180 YALYIGN---LYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIK 236

Query: 239 YSVEPNGMRYVEVHRPLS--AEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRA 296
            + EP+G RY+ VH+PLS    E ++ + +  TLP    +F      D  ++ K L  R 
Sbjct: 237 ATEEPDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERT 296

Query: 297 GYPVAVS 303
           G P  ++
Sbjct: 297 GVPTIIN 303