Pairwise Alignments

Query, 600 a.a., NADH-quinone oxidoreductase subunit C/D from Escherichia coli ECRC98

Subject, 404 a.a., NADH dehydrogenase I, D subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  281 bits (718), Expect = 5e-80
 Identities = 152/388 (39%), Positives = 228/388 (58%), Gaps = 10/388 (2%)

Query: 218 LNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEY 277
           +N GP HP+AHG  R+VL+LDGE +  C P IG  HRG EK+ E +++   +PY DR++Y
Sbjct: 22  INFGPQHPAAHGVLRLVLELDGEIVERCDPHIGLLHRGTEKLMESRTYLQNLPYFDRLDY 81

Query: 278 LGGCVNEMPYVLAVEKLAGITVPARVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVF 337
           +     E  + LA+EKL G  VP R ++IRV+  E+ RI +HLL I+T   DVGA+TP  
Sbjct: 82  VAPMNQEHAWCLAIEKLTGTVVPRRGSLIRVLYCEIGRILNHLLNITTQAMDVGALTPPL 141

Query: 338 FAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDW---MPKRLASY 394
           + F +R+K+    E   G R+H A+FR GGV  DLP     LL +   W    P  +   
Sbjct: 142 WGFEEREKLMVFYERACGARLHAAYFRPGGVHQDLP---PDLLDDIEAWSHEFPSVMDDI 198

Query: 395 EKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEI 454
           +    +N I K R+  +     +E LEWG +G  +R +G+ +D+R+A+PY  Y+ FDF+I
Sbjct: 199 DGLLTENRIFKQRNCDIGVVTEEEILEWGYSGVMVRGSGLAWDLRRAQPYECYDEFDFQI 258

Query: 455 PVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPE--GPFKADHPLTTPPPKERTLQHI 512
           PVG    DCY R +++++E+R+SL+I++Q +  + E  G   A   L TPP +      +
Sbjct: 259 PVGKN-GDCYDRYLVRMQEMRESLKIIQQAIVKLRETKGDVLARGKL-TPPSRADMKTSM 316

Query: 513 ETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSYAHLQQI 572
           E LI HF   + G  +PA E +  +EA KG    +L SDG+   YR +IR P Y HLQ +
Sbjct: 317 EALIHHFKLYTEGFHVPAGEVYAAVEAPKGEFGVFLKSDGTNRPYRAKIRAPGYLHLQSM 376

Query: 573 PAAIRGSLVSDLIVYLGSIDFVMSDVDR 600
               +G  ++D+   +G++D V  ++DR
Sbjct: 377 DHVAKGHQLADVAAIIGTMDVVFGEIDR 404