Pairwise Alignments

Query, 373 a.a., hydrogenase formation protein HypD from Escherichia coli ECRC98

Subject, 365 a.a., hydrogenase formation HypD protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  310 bits (795), Expect = 3e-89
 Identities = 161/367 (43%), Positives = 222/367 (60%), Gaps = 9/367 (2%)

Query: 1   MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60
           + F   ++ P+    LIE L           +RPLR MEVCG HT AIF+ G+  LLP  
Sbjct: 3   VNFSTAFKDPDLSRGLIERLHR-------ALDRPLRFMEVCGTHTVAIFQSGMRPLLPAG 55

Query: 61  VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQ-AKARGADV 119
           V  + GPGCPVCV     +   +++A  P VI  TFGD MRVPG  G  L+ A+A+GA V
Sbjct: 56  VRHLSGPGCPVCVTHESEVAAYLQLAEKPGVIIATFGDLMRVPGPGGDNLKLAQAKGARV 115

Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179
            IVYS  DALKLA +NP   VVF G+GFETT PT A T+  A+ + + NF     H  + 
Sbjct: 116 EIVYSAHDALKLAADNPGDTVVFLGIGFETTAPTVAATVLMARQQGLANFCVLSFHKLVP 175

Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFQRPLVVAGFEPLDLLQGVVML 239
           P LR+LL  PD  +DAFL PGHVS ++G + Y F+A +F+ P ++AGF+P+D+LQ ++++
Sbjct: 176 PALRALLADPDCAVDAFLLPGHVSTILGMEPYRFVADEFRTPGIIAGFDPVDILQALLIM 235

Query: 240 VEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299
           VEQ+      + N YRR V DAGN  A++ +  VF    D+ WRG+G I  SG+   P++
Sbjct: 236 VEQRKTGEFAIVNSYRRAVDDAGNPRAREILDTVF-QTADALWRGIGCIPGSGLVFRPEF 294

Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359
           +++DA A       +       +CG+VL GK +P  CPLF   C P    G  MVS+EG+
Sbjct: 295 EQYDAMARLGLTLPEARPIAGCKCGDVLKGKMQPCDCPLFAKACTPAKPVGPCMVSTEGS 354

Query: 360 CAAWYQY 366
           CAA+++Y
Sbjct: 355 CAAYFKY 361