Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC98

Subject, 331 a.a., RNA polymerase sigma factor RpoS from Pseudomonas stutzeri RCH2

 Score =  409 bits (1050), Expect = e-119
 Identities = 208/277 (75%), Positives = 237/277 (85%)

Query: 53  RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112
           R LDATQLYL EIG+SPLLT EEEV+FAR A +GD A R+RMIESNLRLVVKIARRY NR
Sbjct: 55  RALDATQLYLNEIGFSPLLTPEEEVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNR 114

Query: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172
           GL+LLDL+EEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+V
Sbjct: 115 GLSLLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVV 174

Query: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232
           KELNVYLR AREL+ KLDHEPS EEIA  L+KPV +V RML LNER+TSVD  LG D++K
Sbjct: 175 KELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVTSVDVSLGPDTDK 234

Query: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292
            LLD L D++   P +   DDD+  SI +WL +L+ KQREV+ RRFGL G+EA+TLE+VG
Sbjct: 235 TLLDTLTDDRPTDPCELLLDDDLSNSIDQWLSDLSEKQREVVIRRFGLRGHEASTLEEVG 294

Query: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFR 329
           +EIGLTRERVRQIQVE LRRLREIL+  GL+ +ALF+
Sbjct: 295 QEIGLTRERVRQIQVEALRRLREILERNGLSSDALFQ 331