Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor RpoS from Escherichia coli ECRC98

Subject, 616 a.a., RNA polymerase sigma-70 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  209 bits (533), Expect = 1e-58
 Identities = 103/237 (43%), Positives = 162/237 (68%), Gaps = 3/237 (1%)

Query: 81  RRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137
           RR   G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  
Sbjct: 366 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 425

Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
           RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EPS EE
Sbjct: 426 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEE 485

Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257
           +AE++  P D + ++L++ +   S++TP+G D +  L D + D     P D+   + +K 
Sbjct: 486 LAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKS 545

Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  + L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 546 ATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 602



 Score = 38.1 bits (87), Expect = 6e-07
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 18  DENGVEVFDEKA-----LVEEEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYS 68
           ++ G+ VF+E       ++ E+ +D D AEE   +    +    R  D  ++Y+ E+G  
Sbjct: 49  NDMGIRVFEEAPDADDMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTV 108

Query: 69  PLLTAEEEVYFARRALRG 86
            LLT E E+  A+R   G
Sbjct: 109 ELLTREGEIVIAKRIEEG 126