Pairwise Alignments

Query, 608 a.a., exodeoxyribonuclease V subunit alpha from Escherichia coli ECRC98

Subject, 662 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella loihica PV-4

 Score =  425 bits (1092), Expect = e-123
 Identities = 279/663 (42%), Positives = 384/663 (57%), Gaps = 70/663 (10%)

Query: 1   MKLQKQLLEAVEHKQ----LRPLDVQFALTVAG---DEHPAVTLAAALLSHDAGEGHVCL 53
           ++L + L + ++H Q    L PLD  FAL +     D     TL  ALLS    + H CL
Sbjct: 2   IQLAQPLSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTCL 61

Query: 54  PLSRLENNEESHPLLATCVSEIGELQNWEECLLASQAVSRGDEP--TPMILCGDRLYLNR 111
           PL++++ N   H     C  E+   Q     L   QA+S  D    TP+IL GDRLYL R
Sbjct: 62  PLTQIDKNNPLHEQQPQCQLELTP-QALAGQLTQYQAISPADGELNTPLILDGDRLYLQR 120

Query: 112 MWCNERTVARFFNEVNHAIEVDEA-LLAQTLDKLFP-TGDEINWQKVAAAVALTRRISVI 169
            +  E  VA     +N  I V     +A  L+ LF    ++ +WQKVA A A +++++VI
Sbjct: 121 YYQFETQVAERLTRLNQPITVAAPDKVACILNILFAGQAEKPDWQKVATATAFSQKLAVI 180

Query: 170 SGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-----P 224
           +GGPGTGKTTTV KLL  L      ++  I+L APTGKAAARL+ES+  +  +L     P
Sbjct: 181 TGGPGTGKTTTVTKLLLLLCLE---QQLTIKLVAPTGKAAARLSESIKASKARLAQELAP 237

Query: 225 LTDE----QKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMS 280
             DE    Q K++PE+A+TLHRLLG  PGS R RHH  NPL LD+L++DEASM+DLPMM 
Sbjct: 238 YGDELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLRLDLLILDEASMVDLPMMH 297

Query: 281 RLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYA----------NAGFTAERAGQLS 330
           +L++ALP+H R+I LGD+DQLASVEAGAVL DICA               ++ E+A  LS
Sbjct: 298 KLLEALPEHTRLILLGDQDQLASVEAGAVLADICAGLKQTSSQESGWRMRYSQEKAALLS 357

Query: 331 RLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390
           +LT   +        A L DSL +L  S+RF  D+GIGQLA A+NR D T + +V+Q+ +
Sbjct: 358 QLTNEDLSNYIDARPA-LGDSLAMLMHSHRFKGDAGIGQLAGAVNRRDLTGILSVWQKGY 416

Query: 391 TD---IEKRLLQSGEDYI-AMLEEALAGYGRYLDLL--------------QARAEPDL-- 430
            +   +E +L   G   + A++ +++  Y  YLDL+              +A  + DL  
Sbjct: 417 DELSWLEHQLSPQGNAGLKALMAQSVDKYRPYLDLVGHLANKEQAQEVDKEADQQLDLDE 476

Query: 431 ----IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIAR 486
               II  FN +++LCA+R G +GV G+N  + Q ++  + I   P S +Y GRP++I  
Sbjct: 477 IANQIITRFNNFRILCAMRAGEYGVEGINAAVTQALKDAQLI--QPSSEFYAGRPIIIQS 534

Query: 487 NDSALGLFNGDIGIALDRGQG----TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQ 542
           ND  LGLFNGDIG+ L  G G       +F   DG++  V P+RLP HET +AMTVHKSQ
Sbjct: 535 NDYNLGLFNGDIGVILP-GHGPTHRLMAYFVQADGSLLKVLPARLPSHETCYAMTVHKSQ 593

Query: 543 GSEFDHAALILPSQ----RTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRS 598
           GSEF   A +LP +    +  ++T+ELVYTA+TRA+   S    + +  AA +  T R S
Sbjct: 594 GSEFQQVAFVLPPRPSVAQRQLLTKELVYTAITRAKGHFSCLGSQAVFEAACSQVTLRAS 653

Query: 599 GLA 601
           GLA
Sbjct: 654 GLA 656