Pairwise Alignments

Query, 372 a.a., hydrogenase 2 small subunit from Escherichia coli ECRC98

Subject, 378 a.a., hydrogenase (NiFe) small subunit HydA (RefSeq) from Shewanella loihica PV-4

 Score =  299 bits (765), Expect = 1e-85
 Identities = 146/292 (50%), Positives = 199/292 (68%), Gaps = 4/292 (1%)

Query: 8   IHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVTNPQRPPVIWIGAQECTGCTESLL 67
           +  HGI RRDFMK  AA+ A + L    +  +AE+     R P+IW+   ECTGC+ESL+
Sbjct: 33  MEEHGITRRDFMKWSAAVTAMLALPLPFSTLVAEAAELADRVPLIWLHMAECTGCSESLV 92

Query: 68  RATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKDNG 127
           RA  P +++L+ + +SLEYHE L AA G Q EEN  +ALE YKG Y+L V+G+IP  +NG
Sbjct: 93  RADTPNLDSLIFDHVSLEYHETLMAAAGWQAEENLEHALETYKGNYLLAVEGAIPTANNG 152

Query: 128 IYCMVA--GEPIVDHIRKAAEGAAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTV 185
            +  V   G   ++ I+ AAEGAAAII++G+C+++GGV AA  NPTGA  + +V+  KTV
Sbjct: 153 AFLTVGCKGHTGLEIIKHAAEGAAAIISVGTCASFGGVQAAAPNPTGAKGVDKVV-NKTV 211

Query: 186 INIPGCPPNPHNFLATVAHIITYGKPPKLDDKNRPTFAYGRLIHEHCERRPHFDAGRFAK 245
           +N+ GCPP+  N + T+ + I +GK P LD  NRP +AYG  +H++CERR  FDAG F +
Sbjct: 212 VNLGGCPPSEKNIVGTLMYFIMFGKLPALDMFNRPKWAYGARVHDNCERRGRFDAGEFVE 271

Query: 246 EFGDEGHREGWCLYHLGCKGPETYGNCSTLQFCDVGGVWPVAIGHPCYGCNE 297
           +FGDEG +EG+CLY +GCKGP TY NC T +F +    WPV  GH C GC+E
Sbjct: 272 QFGDEGAKEGYCLYKVGCKGPYTYNNCPTERF-NHHTSWPVLAGHGCMGCSE 322