Pairwise Alignments

Query, 506 a.a., aerotaxis sensor receptor Aer from Escherichia coli ECRC98

Subject, 523 a.a., chemotaxis protein from Herbaspirillum seropedicae SmR1

 Score =  367 bits (943), Expect = e-106
 Identities = 211/513 (41%), Positives = 322/513 (62%), Gaps = 15/513 (2%)

Query: 7   VTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFTLQELQGQPHNMVRHPDMPKAAF 66
           +T     L D  +++S TDLQ  I + N  F+++SGF  +EL G P N+VRHP+MP+ AF
Sbjct: 7   ITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPEMPREAF 66

Query: 67  ADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATDEEIAAV 126
           ADMW TLK+G PW+G+VKNR KNGD+YWV+AN  P+   G+  GYMS+RTR + E++ A 
Sbjct: 67  ADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAA 126

Query: 127 EPLYKALNAGRT-GKRIHKGLVVRKG---WLGKLPSLPLRWR---ARGVMTLMFILLAAM 179
           E  Y+  +AG+  G R+H+G VVR G   WL  L  LP+  R     GV+TLMFIL  A+
Sbjct: 127 EAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMFILGGAV 186

Query: 180 LWFVA-----APVVTYI---LCALVVLLASACFEWQIVRPIENVARQALKVATGERNSVE 231
                     +P   ++     AL++L + A     IV P++   +    +A G+ +S  
Sbjct: 187 AGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGGDLDSHI 246

Query: 232 HLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDN 291
                 ++GL L+A+ QL +  R +I DV   V S+   +  +A G  +L+  T+     
Sbjct: 247 DTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRTEAQASA 306

Query: 292 VQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRI 351
           +++T +++ + AA+V+QN+ +A+ AD+ + +AS  A +GG ++  + +TM++I  ++ +I
Sbjct: 307 LEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEIDAASHKI 366

Query: 352 GTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLI 411
             I  LI+ I+FQTNILALNAAVEAARAGEQG+GFAVVA EVR LA RSA AA DI+ LI
Sbjct: 367 VDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAKDIKGLI 426

Query: 412 DASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELN 471
           D S  KV+SG+Q V    + M ++   V+N+   +A+I+ ++ EQ+ G+  L +AV+ ++
Sbjct: 427 DDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAID 486

Query: 472 LITQKNAELVEESAQVSAMVKHRASRLEDAVTV 504
             TQ+NA LVE++A  +  ++ +A +L  AV+V
Sbjct: 487 ETTQQNAALVEQAAAAAENLRDQAVKLSQAVSV 519