Pairwise Alignments

Query, 629 a.a., ATP-dependent RNA helicase DeaD from Escherichia coli ECRC98

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  571 bits (1472), Expect = e-167
 Identities = 313/612 (51%), Positives = 415/612 (67%), Gaps = 24/612 (3%)

Query: 1   MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF 60
           M+  E TF +LGL  P+L AL++LGYEKP+PIQA  I  L+ G+D+LG AQTG+GKT AF
Sbjct: 1   MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  SLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR 120
           +LPLL  +DP    PQILVLAPTRELAVQVAEA   +SK M+G++V+ +YGGQ    QL 
Sbjct: 61  ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN 120

Query: 121 ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180
           ALR+GPQIVVGTPGR++DH++RGTL L  L+ LVLDEADEML+MGFI+D+E I+   P+ 
Sbjct: 121 ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE 180

Query: 181 HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240
            Q ALFSATMPE I+R+  ++++ P  + I +S TT   I Q +  V    K EALVR L
Sbjct: 181 RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL 240

Query: 241 EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI 300
           E E+ +  IIFVRT+N+ +E+AE LE  GY S+ L+GDMNQ  RE+ +++LK G+LDILI
Sbjct: 241 EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI 300

Query: 301 ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI 360
           ATDVAARGLDVERI  V+NYDIP D+E+YVHRIGRTGRAGR G A+LFV +RE R+LR I
Sbjct: 301 ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI 360

Query: 361 ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELD 420
           ER  K  I  + +P+ E + +RRL +   +V   +++  LD     ++++    +  E+D
Sbjct: 361 ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQL---CQQLEVD 417

Query: 421 LETLAAALLKMAQGERTLIVPP-DAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRE 479
            E LAAALL M Q ER L +PP     R  R+ R+  DRG  DR+DR PRG RE RP   
Sbjct: 418 TEVLAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRG--DRSDRAPRGRRESRPTPA 475

Query: 480 R-------RDVGDMQL--YRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHST 530
                   +D  D+++  Y ++VGRD GV V +IVGA+ANE +I SRYIG I+LF   ++
Sbjct: 476 NLGQADTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITS 535

Query: 531 IELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFS-GERREGGRNF 589
           I+LP+GMP +VLQH  + R+  KP+N++  G    +   + R   R    GER+      
Sbjct: 536 IDLPEGMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERK------ 589

Query: 590 SGERREGGRGDG 601
               R+G R +G
Sbjct: 590 --SHRKGNRDNG 599