Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 693 a.a., type IV pilus secretin (or competence protein) PilQ from Pseudomonas stutzeri RCH2

 Score =  234 bits (596), Expect = 8e-66
 Identities = 154/420 (36%), Positives = 228/420 (54%), Gaps = 38/420 (9%)

Query: 12  QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 71
           +K++L   D+ V  VLQ +A+   LNLV S  VSG ++L L +VPW QAL  V+K+ GL 
Sbjct: 277 EKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNVPWDQALDLVLKTKGLD 336

Query: 72  TRQEGNILSVHSIAWQNDNIA---RQEAEQARAQANL-PLENRNITLQYADAGELAKAGE 127
            RQ GN+L V       D IA   RQE E  R  A L PL    + + YA A ++A+  +
Sbjct: 337 KRQVGNVLLVAPA----DEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQ 392

Query: 128 KLLSA------KGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTIN 181
            + +       +GSM VD RTN ++    +  L  L + VAQ+D+PV QV + A IV  N
Sbjct: 393 SVTNTQGQTDERGSMAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEAN 452

Query: 182 EKSLRELGVKW--TLADAQHAGGVGQVTTLGS----------------DLSVATATTHVG 223
               + LGV+W  T   A   G V     LG                 D+ V   T  +G
Sbjct: 453 VDYDKALGVRWGGTQLFANGRGAVYGNDDLGDEGGNSGDESSGNFPFVDMGVTNRTAGIG 512

Query: 224 FNIGRINGRL-LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 282
             IG I   L LDLELSA+E+    ++++ P+++ +  + A I +GSEIPYQ +S  SGA
Sbjct: 513 --IGYITDNLILDLELSAMEKSGNGEVVSQPKVMTADKETAKILKGSEIPYQEASS-SGA 569

Query: 283 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 342
           TS  F EA L +EVTP +    RI +++ ++++ P       +G    I K E+  ++ V
Sbjct: 570 TSTTFVEAALSLEVTPQITPDNRIIMEVKVTKDEP-DFANDVNGTP-TIRKNEVNAKILV 627

Query: 343 KSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVSSE 402
             GET+ +GG+F+       D VP LGD+P+ G+LFR D   D + EL++F+TP++++ +
Sbjct: 628 NDGETVVIGGVFSNTQSRSVDKVPFLGDLPYLGRLFRRDIVADSKSELLIFLTPKILNHQ 687