Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  261 bits (666), Expect = 5e-74
 Identities = 156/413 (37%), Positives = 249/413 (60%), Gaps = 29/413 (7%)

Query: 14  VTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITR 73
           +++   D+PV  VLQ +A+    NLVVS  V G ++L L  VPW+Q L  +++  GL  R
Sbjct: 166 ISINFQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKR 225

Query: 74  QEGNILSVHSIAWQNDNIARQEAEQARAQANL-PLENRNITLQYADAGELAK--AGE--- 127
            +GN++ + +   + D   +Q  E+AR    L  L++  I + +A A ++A    GE   
Sbjct: 226 VDGNVILI-APKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNV 284

Query: 128 KLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRE 187
            +LS +GS+++D+RTN LL+R+    ++ + + +  +D+PV QV++ A IVT+ E +L E
Sbjct: 285 NMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEE 344

Query: 188 LGVKWTLADAQHAGGVG--------QVTTLGSD-------LSVATATTH-----VGFNIG 227
           LGV+W +     +  VG        Q   L  D       L+V  A+T      + F + 
Sbjct: 345 LGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASSIAFQVA 404

Query: 228 RI-NGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 286
           ++ +G LLDLELSAL+ + + +II+SPRL+ ++ QPA I+QG+EIPY + S  SGA++V 
Sbjct: 405 KLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSSGASTVA 463

Query: 287 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 346
           FK+AVL ++VTP +    R+ L L ++Q+  G+ ++   GE ++ID Q I TQV V +GE
Sbjct: 464 FKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGE 523

Query: 347 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 399
           T+ LGGIF     +  D VPLLGD+P  G LFR   ++  + EL++F+TP++V
Sbjct: 524 TVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576