Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 740 a.a., type II secretion system secretin GspD from Pseudomonas fluorescens SBW25-INTG

 Score =  115 bits (289), Expect = 3e-30
 Identities = 88/301 (29%), Positives = 141/301 (46%), Gaps = 21/301 (6%)

Query: 117 ADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSAH 176
           A+ G    A  K L A   +T  K +N+LL+R        +E  + ++D P  QV++   
Sbjct: 423 AEQGATEDAPTKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQVQIETR 482

Query: 177 IVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRL--- 233
           I+ +      +LGV+W L       G    TT+G+      A    G  +G  +      
Sbjct: 483 ILEVKLTGELDLGVQWYLG---RLAGNSTSTTVGNTAGSQGALGGGGAGLGAADSLFYSF 539

Query: 234 ----LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ---VSSGESGAT--S 284
               L + L ALE   +  ++++P L+  + QPA I+ G  IP     V++G S  T  S
Sbjct: 540 VSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSS 599

Query: 285 VEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA----IDKQEIETQV 340
           VE+ +  + ++V P +   G + +   I Q V     Q +          I  + + TQV
Sbjct: 600 VEYVQTGVILDVVPRINPGGLVYMD--IQQQVSDAQDQASSSNDTQNNPRISTRSVSTQV 657

Query: 341 EVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVS 400
            V+SG+T+ LGG+  + N     +VP LG IP    LF +  K  +R EL+V ITPR+++
Sbjct: 658 AVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVIT 717

Query: 401 S 401
           S
Sbjct: 718 S 718