Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 405 a.a., type II and III secretion system protein family protein from Pseudomonas fluorescens SBW25-INTG

 Score =  100 bits (249), Expect = 8e-26
 Identities = 76/261 (29%), Positives = 123/261 (47%), Gaps = 26/261 (9%)

Query: 152 TALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGS 211
           +AL++L    ++  L   QV+     V ++   L+E   +          G G+   LGS
Sbjct: 115 SALTSLSLSPSEDPLLPSQVQTDIRFVEVSRTKLKEASTRLL--------GTGKNFFLGS 166

Query: 212 D-----------LSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 260
                       L V+T + +VGF  GR++  +     +ALE+      +A P L+A   
Sbjct: 167 PNLLSPSEGVFKLPVSTDSFNVGFGGGRVSAMI-----NALERSGFAYTLARPSLVAMSG 221

Query: 261 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKL--HISQNVPG 318
           Q AS   G E+P  V S  S   S+E+KE  + + +TPTV+ + RI LK+   +S+    
Sbjct: 222 QSASFLAGGEVPVPVPSAGSDTISIEYKEFGIRLTLTPTVIDRNRITLKVAPEVSELDYS 281

Query: 319 QVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLF 378
             +     +V A+  +  +T V +  GE+  + G+ +  N+S     P LGDIP  G  F
Sbjct: 282 NAVIIQGIQVPALTVRRTDTSVSLADGESFVISGLISTNNRSTISKFPGLGDIPILGAFF 341

Query: 379 RHDGKEDERRELVVFITPRLV 399
           R      E +EL++ +TP LV
Sbjct: 342 RDSNISREEKELLMIVTPHLV 362