Pairwise Alignments

Query, 402 a.a., DNA uptake porin HofQ from Escherichia coli ECRC98

Subject, 441 a.a., type IV pilus secretin PilQ family protein from Pseudomonas fluorescens SBW25-INTG

 Score =  223 bits (568), Expect = 8e-63
 Identities = 148/422 (35%), Positives = 229/422 (54%), Gaps = 33/422 (7%)

Query: 6   VQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVV 65
           V A K  ++ L    + +   LQ +A+   LNL+ S DV G+++L L DVPW QAL  V+
Sbjct: 22  VGAYKGDRLNLNFQSIELRTALQQIADVAGLNLIASDDVQGSITLRLKDVPWDQALDLVL 81

Query: 66  KSAGLITRQEGNILSVHSIAWQNDNIARQEA---EQARAQANL-PLENRNITLQYADAGE 121
           ++ GL  R +  +L V       + +A +E    E  +  A L PL    + + YA A +
Sbjct: 82  QAKGLDKRVKAGVLLVAPA----EELAARELLTLESRKQMAELAPLRRELLQVNYAKAAD 137

Query: 122 LAKAG------EKLLSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLPVGQVELSA 175
           LAK        E +   +GS+ VD RTN ++       L  L + VAQ+D+PV QV + A
Sbjct: 138 LAKLFQSVTGLEGVTDERGSVAVDDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEA 197

Query: 176 HIVTINEKSLRELGVKW---TLADAQHAGGVGQVTTLGS------------DLSVATATT 220
            IV  N    + LG +W          AGG+ +    G+            DL   T T+
Sbjct: 198 RIVEANVDYDKSLGARWGGRLNRGNWGAGGIPKPQPEGAEPPENPPSSPFVDLGSLTGTS 257

Query: 221 HVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGES 280
            +G      N  LLDLEL+A+E+    +I++ P+++ S  + A I +G+EIPYQ SS  S
Sbjct: 258 GLGIAFITDN-LLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSS-S 315

Query: 281 GATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQV 340
           GATSV FKEA L +EVTP +    R+ +++ ++++ P  + +  D  V  I K E+  +V
Sbjct: 316 GATSVSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLND--VPPIKKNEVNAKV 373

Query: 341 EVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLVS 400
            VK GET+ +GG+F+       D VP LGD+P+ G+LFR D   +++ EL+VF+TPR+++
Sbjct: 374 LVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVAEKKSELLVFLTPRIMN 433

Query: 401 SE 402
           ++
Sbjct: 434 NQ 435