Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella amazonensis SB2B

 Score =  384 bits (987), Expect = e-111
 Identities = 200/287 (69%), Positives = 237/287 (82%), Gaps = 5/287 (1%)

Query: 1   MTDKMQSLAL-APVG--NLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSH 57
           MT + QS+AL  P G  +L++YI + N+ PML A++E  LA++L   GDL+AAK LI+SH
Sbjct: 1   MTGQTQSMALMVPQGASSLEAYIHSVNSMPMLEAEQEYQLAKRLQETGDLQAAKQLIMSH 60

Query: 58  LRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYV 117
           LRFVVH+A++Y+GYGLPQADLIQEGNIGLMKAV+RF+P+VGVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVVHVAKSYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAA 177
           L+NWRIVKVATTKAQRKLFFNLRK KQRLGWF+ DEV MVA  LGV+  DV EMESRMAA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNLRKAKQRLGWFSDDEVAMVAENLGVSKDDVTEMESRMAA 180

Query: 178 QDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQ 237
           QD  FDL +D D D +  APV YL+D SS+ A  IE+DNWE  A NRL  A++ LDERSQ
Sbjct: 181 QDQAFDLVNDHD-DDEGFAPVHYLEDHSSDLAANIENDNWESNAQNRLIAAIKTLDERSQ 239

Query: 238 DIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA 284
            I+RARWLD+D K TLQELA++Y VSAER+RQLEKNAM KL+A +EA
Sbjct: 240 HILRARWLDDD-KVTLQELAEQYQVSAERIRQLEKNAMNKLKARMEA 285