Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

 Score =  204 bits (519), Expect = 2e-57
 Identities = 119/280 (42%), Positives = 170/280 (60%), Gaps = 11/280 (3%)

Query: 9   ALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNY 68
           A++  G L  Y+     +PML+ +EE  LA++L   GD +AA  L+ SHLR V  IA  Y
Sbjct: 10  AVSDEGGLSRYLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLRLVAKIAMGY 69

Query: 69  AGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVAT 128
             YGLP +DL+ EGN+GLMKAV++F  + G RL ++A+ WIKA I+EY+L +W +VKV T
Sbjct: 70  RHYGLPVSDLVAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILNSWSLVKVGT 129

Query: 129 TKAQRKLFFNLRKTKQRLGWFNQ-----DEVEMVARELGVTSKDVREMESRMAAQDMTFD 183
             AQ+KLFFNLR+ K +LG + +     ++V+ +A +L VT  DV  M  R+A  D + +
Sbjct: 130 VAAQKKLFFNLRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRRLAGPDASLN 189

Query: 184 LSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANR-LTDAMQGLDERSQDIIRA 242
           +   +D   Q M  +  L D+  N  + +   + E+   NR L DA+  L ER + II A
Sbjct: 190 VPVGED---QSMDRMDLLMDEGDN-QEEVYAAHEEQSLGNRLLKDALSTLTERERHIITA 245

Query: 243 RWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
           R L      TL+EL   YGVS ERVRQ+E  A +KL+ A+
Sbjct: 246 RRL-RSEPVTLEELGGEYGVSRERVRQIENRAFEKLQTAV 284