Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 298 a.a., RNA polymerase sigma-32 factor RpoH from Phaeobacter inhibens DSM 17395

 Score =  203 bits (516), Expect = 4e-57
 Identities = 111/276 (40%), Positives = 169/276 (61%), Gaps = 7/276 (2%)

Query: 9   ALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNY 68
           A  P G L+ Y++    +P+L  +EE  LA++     D  +A  ++ SHLR    IA  Y
Sbjct: 9   APTPEGGLNRYLQEIRKFPLLEPEEEYMLAKRWVEEQDSASAHKMVTSHLRLAAKIAMGY 68

Query: 69  AGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVAT 128
            GYGLPQA++I E N+GLM+AV+RF+PE G RL ++A+ WI+A I EY+LR+W +VK+ T
Sbjct: 69  RGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGT 128

Query: 129 TKAQRKLFFNLRKTKQRLGWFNQ-----DEVEMVARELGVTSKDVREMESRMAAQDMTFD 183
           T AQ+KLFFNLRK K R+G   +     D V+ +A +LGVT  +V  M  RM+  D + +
Sbjct: 129 TSAQKKLFFNLRKAKARIGALEEGDLHPDSVKKIATDLGVTETEVISMNRRMSGGDASLN 188

Query: 184 LSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRAR 243
            +   + +   M    +L+D+ ++ A   E  +  E     L  A++ L++R +DI+  R
Sbjct: 189 ATVGSEGEG-TMQWQDWLEDEDADQAGDYEARDELEARRELLASALEVLNDREKDILTQR 247

Query: 244 WLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLR 279
            L  D   TL++L+ +YGVS ER+RQ+E  A +KL+
Sbjct: 248 RL-ADQAKTLEDLSTQYGVSRERIRQIEVRAFEKLQ 282