Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella loihica PV-4

 Score =  367 bits (942), Expect = e-106
 Identities = 191/286 (66%), Positives = 232/286 (81%), Gaps = 5/286 (1%)

Query: 1   MTDKMQSLALA---PVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSH 57
           MT++ QS+AL       +L++YI +A+  PML A+EE  LA++L   GD++AAK LI+SH
Sbjct: 1   MTNQTQSMALMVPQSSSSLEAYIHSAHNIPMLEANEEYELAKRLQETGDIQAAKQLIMSH 60

Query: 58  LRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYV 117
           LRFV+H+A+ YAGYGLPQADLIQEGNIGLMKAV+RF+P+VGVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVIHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAA 177
           L+NWRIVKVATTKAQRKLFFNLRK K+RLGWF+ +EV MVA  LGV+  DV EMESRMAA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNLRKAKKRLGWFSDEEVTMVAENLGVSKSDVTEMESRMAA 180

Query: 178 QDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQ 237
           QD  FDL+SD+D D Q  APV YL+D SS+ A  +E+DN+E     RL  A++ LDERSQ
Sbjct: 181 QDPAFDLASDND-DDQDYAPVHYLEDHSSDIASQVENDNFEADNQTRLLAAIKTLDERSQ 239

Query: 238 DIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIE 283
            I++ARWLDE+ K+TLQELA  Y VSAER+RQLEKNAM KL+  +E
Sbjct: 240 HILQARWLDEE-KTTLQELAATYQVSAERIRQLEKNAMNKLKGRME 284