Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 285 a.a., alternative sigma factor RpoH from Dechlorosoma suillum PS

 Score =  302 bits (773), Expect = 6e-87
 Identities = 152/272 (55%), Positives = 202/272 (74%), Gaps = 1/272 (0%)

Query: 13  VGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYG 72
           VGNLD+YI+AA  +PMLS  EE ALA +L    D++AA+ L+LSHLR V+ IAR Y GYG
Sbjct: 15  VGNLDAYIQAARRFPMLSEAEEFALARRLREEDDVDAARQLVLSHLRLVIAIARGYLGYG 74

Query: 73  LPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQ 132
           LP ADLIQEGNIGLMKAV+RF+P  GVRLVSFA+HWIKAEIHEY+L+NWR+VKVATTKAQ
Sbjct: 75  LPHADLIQEGNIGLMKAVKRFDPSRGVRLVSFAMHWIKAEIHEYILKNWRLVKVATTKAQ 134

Query: 133 RKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDS 192
           RKLFFNLR  K         EV+ +A +LGV +++V EME+RM  +D+  D S DD+ D+
Sbjct: 135 RKLFFNLRSLKASSDTLTPAEVDEIAYKLGVKAEEVVEMETRMGGRDLALDGSPDDEDDN 194

Query: 193 QPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNKST 252
           + +AP+ YL D ++     +E   ++   ++ L  A+ GLDERS+ I+ ARWLDE+N +T
Sbjct: 195 R-VAPIAYLADSAAEPTQVLEAREYDRLQSDGLQQALAGLDERSRRIVEARWLDEENPAT 253

Query: 253 LQELADRYGVSAERVRQLEKNAMKKLRAAIEA 284
           L +LA  +GVSAER+RQ+E  A++K++  + A
Sbjct: 254 LHDLAAEFGVSAERIRQIEVKALQKMKGLLAA 285