Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 474 a.a., putative RNA polymerase, sigma 70 family subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  174 bits (442), Expect = 3e-48
 Identities = 103/271 (38%), Positives = 160/271 (59%), Gaps = 13/271 (4%)

Query: 15  NLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLP 74
           +L  Y+R  + +P+L  DEE  LA ++   GD +AA  L+ SHLR VV IA ++    + 
Sbjct: 194 SLHLYLREISRFPLLKPDEEFDLARRVQEQGDSDAAFRLVTSHLRLVVKIAMDFQRRWMQ 253

Query: 75  QA-DLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQR 133
              DLIQEGN+GLM+AV +F+PE G++   +A  WIKA I ++++ NWR+VK+ TT+AQR
Sbjct: 254 NVLDLIQEGNVGLMRAVNKFDPEKGIKFSYYAAFWIKAYILKFIMDNWRMVKIGTTQAQR 313

Query: 134 KLFFNLRKTKQRLGWFNQD-EVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDS 192
           KLF+NL K +QRL     D +  +++ +L VT + V EME R+ + DM+ D++  +DS  
Sbjct: 314 KLFYNLNKERQRLIAQGYDPDATILSEKLNVTVEQVIEMEQRLDSSDMSLDITVGEDSGG 373

Query: 193 QPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQ----GLDERSQDIIRARWLDED 248
                     D       GIE+     + A  + D +Q     L ++   I++ R L E 
Sbjct: 374 ATR------MDFLPALGPGIEETLANSEIARMVQDRVQTILPKLSDKEAYILQHRLLSE- 426

Query: 249 NKSTLQELADRYGVSAERVRQLEKNAMKKLR 279
              TL+E+ ++Y ++ ERVRQ+E   ++KLR
Sbjct: 427 QPVTLREIGEKYDITRERVRQIEARLLQKLR 457