Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 298 a.a., RNA polymerase, sigma 32 subunit, RpoH (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  209 bits (531), Expect = 8e-59
 Identities = 116/281 (41%), Positives = 175/281 (62%), Gaps = 11/281 (3%)

Query: 9   ALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSHLRFVVHIARNY 68
           A +P   L+ Y++    +PML  +EE  LA++   H D EAA  ++ SHLR    IA  Y
Sbjct: 9   APSPEQGLNRYLQEIRKFPMLEPEEEYMLAKRWVDHEDTEAAHKMVTSHLRLAAKIAMGY 68

Query: 69  AGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYVLRNWRIVKVAT 128
            GYGLPQA++I E N+GLM+AV+RF+PE G RL ++A+ WI+A I EY+LR+W +VK+ T
Sbjct: 69  RGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWWIRASIQEYILRSWSLVKLGT 128

Query: 129 TKAQRKLFFNLRKTKQRLGWFNQ-----DEVEMVARELGVTSKDVREMESRMAAQDMTFD 183
           T AQ+KLFFNLRK K R+G   +     + V  +A +L VT  +V  M  RM+  D + +
Sbjct: 129 TSAQKKLFFNLRKAKNRIGALEEGDLRPENVARIANDLNVTEDEVISMNRRMSGGDASLN 188

Query: 184 --LSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIR 241
             + SD +  ++      +L+D+ ++ AD   + +        L +AM  L++R +DI+ 
Sbjct: 189 AMIGSDGEGATEWQD---WLEDEDADQADDFAEKDELMVRRELLAEAMGVLNDREKDILM 245

Query: 242 ARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAI 282
            R L ED  +TL+EL++ YGVS ER+RQ+E  A +KL+ A+
Sbjct: 246 KRRL-EDKPATLEELSEVYGVSRERIRQIEVRAFEKLQKAM 285